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Revisions of python-scipy

buildservice-autocommit accepted request 1170765 from

Dirk Mueller (dirkmueller) 1 day ago (revision 102)

baserev update by copy to link target

Dirk Mueller (dirkmueller) accepted request 1170301 from

Benjamin Greiner (bnavigator) 2 days ago (revision 101)

- Skip another test out of numeric precision for 32-bit
- Fix HPC _version

Dirk Mueller (dirkmueller) accepted request 1169336 from

Benjamin Greiner (bnavigator) 9 days ago (revision 100)

- Update to 1.13.0
  ## Highlights of this release
  * Support for NumPy 2.0.0.
  * Interactive examples have been added to the documentation,
    allowing users to run the examples locally on embedded
    Jupyterlite notebooks in their browser.
  * Preliminary 1D array support for the COO and DOK sparse
    formats.
  * Several scipy.stats functions have gained support for
    additional axis, nan_policy, and keepdims arguments.
    scipy.stats also has several performance and accuracy
    improvements.
  ## New features
  * scipy.integrate improvements
  * scipy.io improvements
  * scipy.interpolate improvements
  * scipy.signal improvements
  * scipy.sparse improvements
  * scipy.spatial improvements
  * scipy.special improvements
  * scipy.stats improvements
  ## Deprecated features
  * Complex dtypes in PchipInterpolator and Akima1DInterpolator
    have been deprecated and will raise an error in SciPy 1.15.0.
    If you are trying to use the real components of the passed
    array, use np.real on y.
  ## Other changes
  * The second argument of scipy.stats.moment has been renamed to
    order while maintaining backward compatibility.
- Release 1.12.0
  ## Highlights of this release
  * Experimental support for the array API standard has been added
    to part of scipy.special, and to all of scipy.fft and
    scipy.cluster. There are likely to be bugs and early feedback
    for usage with CuPy arrays, PyTorch tensors, and other array
    API compatible libraries is appreciated. Use the
    SCIPY_ARRAY_API environment variable for testing.
  * A new class, ShortTimeFFT, provides a more versatile
    implementation of the short-time Fourier transform (STFT), its
    inverse (ISTFT) as well as the (cross-) spectrogram. It
    utilizes an improved algorithm for calculating the ISTFT.
  * Several new constructors have been added for sparse arrays, and
    many operations now additionally support sparse arrays, further
    facilitating the migration from sparse matrices.
  * A large portion of the scipy.stats API now has improved support
    for handling NaN values, masked arrays, and more fine-grained
    shape-handling. The accuracy and performance of a number of
    stats methods have been improved, and a number of new
    statistical tests and distributions have been added.
  ## New features
  * scipy.cluster improvements
  * scipy.fft improvements
  * scipy.integrate improvements
  * scipy.interpolate improvements
  * scipy.linalg improvements
  * scipy.ndimage improvements
  * scipy.optimize improvements
  * scipy.signal improvements
  * scipy.sparse improvements
  * scipy.spatial improvements
  * scipy.special improvements
  * scipy.stats improvements
  ## Deprecated features
  * Error messages have been made clearer for objects that don’t
    exist in the public namespace and warnings sharpened for
    private attributes that are not supposed to be imported at all.
  * scipy.signal.cmplx_sort has been deprecated and will be removed
    in SciPy 1.15. A replacement you can use is provided in the
    deprecation message.
  * Values the argument initial of
    scipy.integrate.cumulative_trapezoid other than 0 and None are
    now deprecated.
  * scipy.stats.rvs_ratio_uniforms is deprecated in favour of
    scipy.stats.sampling.RatioUniforms
  * scipy.integrate.quadrature and scipy.integrate.romberg have
    been deprecated due to accuracy issues and interface
    shortcomings. They will be removed in SciPy 1.15. Please use
    scipy.integrate.quad instead.
  * Coinciding with upcoming changes to function signatures (e.g.
    removal of a deprecated keyword), we are deprecating positional
    use of keyword arguments for the affected functions, which will
    raise an error starting with SciPy 1.14. In some cases, this
    has delayed the originally announced removal date, to give time
    to respond to the second part of the deprecation. Affected
    functions are:
    - linalg.{eigh, eigvalsh, pinv}
    - integrate.simpson
    - signal.{firls, firwin, firwin2, remez}
    - sparse.linalg.{bicg, bicgstab, cg, cgs, gcrotmk, gmres,
      lgmres, minres, qmr, tfqmr}
    - special.comb
    - stats.kendalltau
  * All wavelet functions have been deprecated, as PyWavelets
    provides suitable implementations; affected functions are:
    signal.{daub, qmf, cascade, morlet, morlet2, ricker, cwt}
  * scipy.integrate.trapz, scipy.integrate.cumtrapz, and
    scipy.integrate.simps have been deprecated in favour of
    scipy.integrate.trapezoid,
    scipy.integrate.cumulative_trapezoid, and
    scipy.integrate.simpson respectively and will be removed in
    SciPy 1.14.
  * The tol argument of
    scipy.sparse.linalg.{bcg,bicstab,cg,cgs,gcrotmk,gmres,lgmres,
    minres,qmr,tfqmr}
    is now deprecated in favour of rtol and will be removed in
    SciPy 1.14. Furthermore, the default value of atol for these
    functions is due to change to 0.0 in SciPy 1.14.
  ## Expired Deprecations
  * There is an ongoing effort to follow through on long-standing
    deprecations. The following previously deprecated features are
    affected:
  * The centered keyword of scipy.stats.qmc.LatinHypercube has been
    removed. Use scrambled=False instead of centered=True.
  * scipy.stats.binom_test has been removed in favour of
    scipy.stats.binomtest.
  * In scipy.stats.iqr, the use of scale='raw' has been removed in
    favour of scale=1.
  * Functions from NumPy’s main namespace which were exposed in
    SciPy’s main namespace, such as numpy.histogram exposed by
    scipy.histogram, have been removed from SciPy’s main namespace.
    Please use the functions directly from numpy.
  ## Other changes
  * The arguments used to compile and link SciPy are now available
    via show_config.
- Drop 8c96a1f742335bca283aae418763aaba62c03378.patch (merged
  upstream)
- Add scipy-pr20530-f2py_error.patch gh#scipy/scipy#20530, used to
  find workaround for failing HPC build gh#scipy/scipy#20535

buildservice-autocommit accepted request 1153127 from

Matej Cepl (mcepl) 2 months ago (revision 99)

baserev update by copy to link target

Matej Cepl (mcepl) accepted request 1152470 from

Egbert Eich (eeich) 2 months ago (revision 98)

- Add 8c96a1f742335bca283aae418763aaba62c03378.patch
  to fix issues with OpenBLAS 0.3.26 and later (boo#1220163).

  This fix is required to update OpenBLAS in oS:Factory!

buildservice-autocommit accepted request 1141434 from

Daniel Garcia (dgarcia) 3 months ago (revision 97)

baserev update by copy to link target

Daniel Garcia (dgarcia) committed 3 months ago (revision 96)

- Disable broken tests in s390x, gh#scipy/scipy#18878, bsc#1218608

buildservice-autocommit accepted request 1127833 from

Steve Kowalik (StevenK) 5 months ago (revision 95)

baserev update by copy to link target

Steve Kowalik (StevenK) committed 5 months ago (revision 94)

skip a test on 32 bit

Steve Kowalik (StevenK) committed 5 months ago (revision 93)

- Update to 1.11.4:
  * MAINT: ensure cobyla objective returns scalar
  * MAINT: fixup dep warning
  * BUG: interpolate: fix spalde with len(c) < len(t)
  * BUG: pass unused xrtol in fmin_bfgs to _minimize_bfgs
  * BUG: Regression test for lsq trf boundary error
  * BUG: lsq trf gives x=1e-10 if x0 is near a bound
  * BUG: make Bessel-roots function not hang and not skip roots
  * io/matlab: Fix loading of mat files containing fn handles when
    simplify_cells=True
  * BUG: make L-BFGS-B work with single precision gradient
  * MAINT: stats: fix NumPy DeprecationWarnings
  * BUG: sparse.linalg: Cast to intc before SuperLU
  * MAINT: Use deb_system scheme to match meson's path inference & fix aarch64
  * BUG: Fix python3.12 distutils dev.py build
  * BUG: stats: remove use of `BOOST_MATH_DECLARE_SPECIAL_FUNCTIONS`
  * MAINT: fix libquadmath licence
  * MAINT: newton, make sure x0 is an inexact type
  * MAINT: stats.CovViaEigendecomposition: fix _colorize for singular
    covariance
  * TST: fix `TestODR.test_implicit` test failure with tolerance bump
  * BUG: signal: freqz rfft grid fix
  * BUG: Support sparse arrays in scipy.sparse.csgraph.laplacian
  * MAINT: signal: Remove the cval parameter from the private function
    _pad_test.
  * BLD: Avoid absolute pathnames in .pyx files
  * BUG: Add back make_strictly_feasible to lsq trf.
  * MAINT: should not be using np.float64() on arrays
  * BUG: trust-constr Bounds exclusive
  * BUG: sparse.csgraph: Support int64 indices in traversal.pyx

buildservice-autocommit accepted request 1116438 from

Dirk Mueller (dirkmueller) 7 months ago (revision 92)

baserev update by copy to link target

Dirk Mueller (dirkmueller) accepted request 1116423 from

Eric Schirra (ecsos) 7 months ago (revision 91)

- Let it build for Leap 15.6 also.

buildservice-autocommit accepted request 1101324 from

Matej Cepl (mcepl) 9 months ago (revision 90)

baserev update by copy to link target

Matej Cepl (mcepl) accepted request 1101087 from

Markéta Machová (mcalabkova) 9 months ago (revision 89)

- Add upstream intc.patch to fix gh#scipy/scipy#18603

Dirk Mueller (dirkmueller) accepted request 1100589 from

Markéta Machová (mcalabkova) 9 months ago (revision 88)

- Update to 1.11.1
  * Several scipy.sparse array API improvements, including sparse.sparray, 
    a new public base class distinct from the older sparse.spmatrix class, 
    proper 64-bit index support, and numerous deprecations paving the way 
    to a modern sparse array experience.
  * scipy.stats added tools for survival analysis, multiple hypothesis 
    testing, sensitivity analysis, and working with censored data.
  * A new function was added for quasi-Monte Carlo integration, and linear 
    algebra functions det and lu now accept nD-arrays.
  * An axes argument was added broadly to ndimage functions, facilitating 
    analysis of stacked image data.

buildservice-autocommit accepted request 1096504 from

Matej Cepl (mcepl) 10 months ago (revision 87)

baserev update by copy to link target

Matej Cepl (mcepl) accepted request 1096456 from

Andreas Schneider (gladiac) 10 months ago (revision 86)

- Use sle15_python_module_pythons
- Require GCC >= 8

buildservice-autocommit accepted request 1070755 from

Matej Cepl (mcepl) about 1 year ago (revision 85)

baserev update by copy to link target

Matej Cepl (mcepl) accepted request 1070737 from

Martin Liška (marxin) about 1 year ago (revision 84)

- Fix i686 tests for GCC 13 due to:
  https://gcc.gnu.org/gcc-13/porting_to.html#excess-precision

buildservice-autocommit accepted request 1067788 from

Dirk Mueller (dirkmueller) about 1 year ago (revision 83)

baserev update by copy to link target

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