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FASTA v36.3.5e (DNA and protein sequence alignment software)

The FASTA programs find regions of local or global (new) similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. 

FASTA includes the following binaries:

fasta
 compares a protein sequence to another protein sequence or to a protein database, or a DNA sequence to another DNA sequence or a DNA library.  
ssearch
 performs a rigorous Smith-Waterman alignment between a protein sequence and another protein sequence or a protein database.
fastx/fasty
 compare a DNA sequence to a protein sequence database, translating the DNA sequence in three forward (or reverse) frames and allowing frameshifts.  
 prfx/prss
evaluate the significance of pairwise similarity scores using a Monte Carlo analysis. 

Source Files

Filename Size Changed Actions
FASTA.spec 6.35 KB almost 6 years ago Download File
fasta-36.3.5e.tar.gz 922 KB almost 6 years ago Download File

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