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FASTX-Toolkit v0.0.13.2 (Collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing)

Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information).

The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many, many others.

However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results.

The FASTX-Toolkit tools perform some of these preprocessing tasks.

Source Files

Filename Size Changed Actions
fastx_toolkit-0.0.13.2.tar.bz2 533 KB almost 6 years ago Download File
fastx_toolkit.spec 2.26 KB almost 6 years ago Download File

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