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JELLYFISH v1.1.11 (Fast, memory-efficient k-mer counting algorithm)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. See the documentation for more details. 

Source Files

Filename Size Changed Actions
jellyfish-1.1.11.tar.gz 1.02 MB about 5 years ago Download File
jellyfish-1.1.6.tar.gz 1.01 MB almost 6 years ago Download File
jellyfish.spec 5.22 KB about 5 years ago Download File

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