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WHAM v0.1.5 (Wisconsin's High-Throughput Alignment Method)

WHAM is a high-throughput sequence alignment tool developed at University of Wisconsin-Madison. It aligns short DNA sequences (reads) to the whole human genome at a rate of over 1500 million 60bps reads per hour, which is one to two orders of magnitudes faster than the leading state-of-the-art techniques. Here is a quick feature list for the current version (v 0.1.5) of WHAM:

    Supports paired-end reads
    Supports up to 5 errores
    Supports alignments with gaps
    Supports quality scores for filtering invalid alignments, and sorting valid alignments
    finds ALL valid alignments
    Supports multi-threading
    Supports rich reporting modes
    Supports SAM format output

Curious about the name WHAM – it stands for Wisconsin’s High-throughput Alignment Method.

Source Files

Filename Size Changed Actions
WHAM.spec 1.83 KB Download File
wham-v0.1.5.tar.gz 117 KB Download File

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