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brat_bw v2.0.1 (Bisulfite-treated Reads Analysis Tool using FM-index (Burrows-Wheeler transform))

BRAT is an accurate and efficient tool for mapping short bisulfite-treated reads obtained from the Solexa-Illumina Genome Analyzer. BRAT supports single-end and pair-end short reads mapping and allows alignment of different length reads/mates.

BRAT-bw is BRAT-BW, a fast, accurate and memory-efficient tool that maps bisulfite-treated short reads (BS-seq) to a reference genome using the FM-index (Burrows-Wheeler transform).

The package includes tools to trim low quality reads ends and to report A, C, G, T counts at each base for forward and reverse strands of references.

Source Files

Filename Size Changed Actions
brat_bw-2.0.1.tar.gz 4.25 MB
brat_bw.spec 1.92 KB Download File

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