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A C++ library for parsing and manipulating VCF files

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format 
intended to concisely describe reference-indexed variations between 
individuals. VCF provides a common interchange format for the description of 
variation in individuals and populations of samples, and has become the 
defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it 
can be described by VCF. It is both:

- an API for parsing and operating on records of genomic variation as it can be 
described by the VCF format,

- and a collection of command-line utilities for executing complex 
manipulations on VCF files.

The API itself provides a quick and extremely permissive method to read and 
write VCF files. Extensions and applications of the library provided in the 
included utilities (*.cpp) comprise the vast bulk of the library's utility 
for most users.

Source Files

Filename Size Changed Actions
fastahack-master-c68cebb4f2.zip 21.7 KB Download File
filevercmp-master-378bae779b.zip 4.79 KB Download File
fsom-master-f688ef24bb.zip 11.7 KB Download File
intervaltree-master-05c5d572c3.zip 4.69 KB Download File
multichoose-master-0d5c4079a0.zip 9.49 KB Download File
smithwaterman-master-83efa7b34d.zip 43 KB Download File
tabixpp-master-c2d6c12eb8.zip 75.9 KB Download File
vcflib-master-586c5ae5d5.zip 175 KB Download File
vcflib-rpmlintrc 39 Bytes Download File
vcflib.spec 16.9 KB Download File

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