Edit Package seaview



SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny.
* SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
* SeaView drives programs muscle or Clustal Omega for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files.
* Seaview drives the Gblocks program to select blocks of evolutionarily conserved sites.
* SeaView computes phylogenetic trees by parsimony, using PHYLIP's dnapars/protpars algorithm; distance, with NJ or BioNJ algorithms on a variety of evolutionary distances; maximum likelihood, driving program PhyML 3.1.
* Seaview can use the Transfer Bootstrap Expectation method to compute the bootstrap support of PhyML and distance trees.
* Seaview uses the Treerecs method to reconcile gene and species trees.
* SeaView prints and draws phylogenetic trees on screen, SVG, PDF or PostScript files.
* SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet.

Source Files
Filename Size Changed
seaview.changes 0000001365 1.33 KB 8 months
seaview.desktop 0000000216 216 Bytes 8 months
seaview.diff 0000000450 450 Bytes 9 months
seaview.html 0000072355 70.7 KB 9 months
seaview.png 0000016730 16.3 KB 9 months
seaview.spec 0000002919 2.85 KB 8 months
seaview.tar.gz 0000471739 461 KB 9 months
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