File jmol.man of Package jmol

.\" Manpage for jmol.
.\" Contact thod_@gmx.de to correct errors or typos.
.TH man 1 "24 May 2015" "INST_VERSION" "jmol man page"
.SH NAME
jmol \- INST_SUMMARY
.SH SYNOPSIS
jmol [options]
.SH DESCRIPTION
Jmol is an open-source Java viewer for chemical structures in 3D with features for chemicals, crystals, materials and biomolecules.
.SH OPTIONS
 -o,--noconsole               no console -- all output to sysout
 -c,--check                   check script syntax only - no file loading
 -k,--kiosk                   kiosk mode -- no frame
 -C,--checkload               check script syntax only - with file loading
 -s,--script                  script file to execute or '-' for System.in
 -q,--quality                 JPG image quality (1-100; default 75) or PNG
                              image compression (0-9; default 2, maximum compression 9)
 -g,--geometry                window width x height, e.g. -g500x500
 -p,--printOnly               send only output from print messages to
                              console (implies -i)
 -x,--exit                    exit after script (implicit with -n)
 -j,--jmolscript2             Jmol script to execute AFTER -s option
 -J,--jmolscript1             Jmol script to execute BEFORE -s option
 -P,--port                    port for JSON/MolecularPlayground-style
                              communication
 -D <property=value>          supported options are given below
 -I,--input                   allow piping of input from System.Input
 -L,--nosplash                start with no splash screen
 -M,--multitouch              use multitouch interface (requires
                              "sparshui" parameter
 -R,--restricted              restrict local file access
 -T,--headlessmaxtime         headless max time (sec)
 -b,--backgroundtransparent   transparent background
 -d,--debug                   debug
 -h,--help                    give this help page
 -i,--silent                  silent startup operation
 -l,--list                    list commands during script execution
 -m,--menu                    menu file to use
 -n,--nodisplay               no display (and also exit when done)
 -r,--restrictSpt             restrict local file access (allow reading of
                              SPT files)
 -t,--threaded                independent command thread
 -w,--write                   CLIP or GIF|JPG|JPG64|PNG|PPM:filename
.SH EXAMPLES
Jmol -ions myscript.spt -w JPEG:myfile.jpg > output.txt

The -D options are as follows (defaults in parenthesis) and must be called preceding '-jar Jmol.jar':

  cdk.debugging=[true|false] (false)
  cdk.debug.stdout=[true|false] (false)
  display.speed=[fps|ms] (ms)
  logger.debug=[true|false] (false)
  logger.error=[true|false] (true)
  logger.fatal=[true|false] (true)
  logger.info=[true|false] (true)
  logger.logLevel=[true|false] (false)
  logger.warn=[true|false] (true)
  plugin.dir (unset)
  user.language=[ca|cs|de|en_GB|en_US|es|fr|hu|it|ko|nl|pt_BR|tr|zh_TW] (en_US)
.SH SEE ALSO
java(1)

For more information, see also <http://jmol.sourceforge.net/>
.SH BUGS
No known bugs.
.SH AUTHOR
Jmol authors (jmol-developers@lists.sf.net)