File bowtie.spec of Package bowtie

# spec file for package bowtie
# Copyright (c) 2016 SUSE LINUX GmbH, Nuernberg, Germany.
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via

Name:           bowtie
Version:        1.2.3
Release:        0
Summary:        Fast and memory-efficient short read aligner
License:        Artistic-1.0
Group:          Productivity/Scientific/Other
BuildRequires:  gcc-c++
BuildRequires:  pkgconfig(zlib)
BuildRequires:  tbb-devel
BuildRoot:      %{_tmppath}/%{name}-%{version}-build
ExclusiveArch:  x86_64 s390x ppc64le ppc64

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

%setup -q

make %{?_smp_mflags}

%make_install prefix=%{_prefix}
sed -i '1{s|^#!.*env python|#!/usr/bin/python|}' %{buildroot}%{_bindir}/bowtie*

%license LICENSE

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