File R-gmvjoint.spec of Package R-gmvjoint

# Automatically generated by CRAN2OBS
# 
# Spec file for package gmvjoint 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
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%global packname  gmvjoint 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.4.5 
Release:        0 
Summary:        Joint Models of Survival and Multivariate Longitudinal Data 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         gmvjoint_0.4.5.tar.gz 
Requires:       R-base 
Requires:	R-glmmTMB
Requires:	R-Rcpp
Requires:	R-mvtnorm
Requires:	R-pracma
Requires:	R-reformulas
Requires:	R-statmod
Requires:	R-xtable
Requires:	R-RcppArmadillo
Requires:	R-TMB
Requires:	R-lme4
Requires:	R-numDeriv
Requires:	R-pbkrtest
Requires:	R-sandwich
Requires:	R-RcppEigen
Requires:	R-Rdpack
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-broom
Requires:	R-dplyr
Requires:	R-doBy
Requires:	R-rbibutils
Requires:	R-zoo
Requires:	R-backports
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-purrr
Requires:	R-rlang
Requires:	R-stringr
Requires:	R-tibble
Requires:	R-tidyr
Requires:	R-cowplot
Requires:	R-Deriv
Requires:	R-ggplot2
Requires:	R-modelr
Requires:	R-microbenchmark
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-scales
Requires:	R-isoband
Requires:	R-S7
Requires:	R-withr
Requires:	R-utf8
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-glmmTMB
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-pracma
BuildRequires: 	R-reformulas
BuildRequires: 	R-statmod
BuildRequires: 	R-xtable
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-TMB-devel
BuildRequires: 	R-lme4
BuildRequires: 	R-numDeriv
BuildRequires: 	R-pbkrtest
BuildRequires: 	R-sandwich
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-Rdpack
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-broom
BuildRequires: 	R-dplyr
BuildRequires: 	R-doBy
BuildRequires: 	R-rbibutils
BuildRequires: 	R-zoo
BuildRequires: 	R-backports
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-purrr
BuildRequires: 	R-rlang
BuildRequires: 	R-stringr
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyr
BuildRequires: 	R-cowplot
BuildRequires: 	R-Deriv
BuildRequires: 	R-ggplot2
BuildRequires: 	R-modelr
BuildRequires: 	R-microbenchmark
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-scales
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-withr
BuildRequires: 	R-utf8
BuildRequires: 	R-stringi
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires:  gcc gcc-c++ gcc-fortran
 
%description 
Fit joint models of survival and multivariate longitudinal data. The 
longitudinal data is specified by generalised linear mixed models. The 
joint models are fit via maximum likelihood using an approximate 
expectation maximisation algorithm. Bernhardt (2015) 
<doi:10.1016/j.csda.2014.11.011>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog