IDBA v1.1.0 (A practical iterative De Bruijn Graph De Novo Assembler for sequence assembly)
All IDBA (iterative de Bruijn graph assembler) series assemblers are refined and included in this package. Scaffolding on multiple levels of paired-end reads are supported in IDBA, IDBA-UD and IDBA-Hybrid.
The basic IDBA is included only for comparison.
If you are assembling genomic data without reference, please use IDBA-UD.
If you are assembling genomic data with a similar reference genome, please use IDBA-Hybrid.
If you are assembling transcriptome data, please use IDBA-Tran.
Several other binaries and scripts from the IDBA package are included.