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OLego v1.0.8 (A program specifically designed for de novo spliced mapping of mRNA-seq reads)

OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data.

Source Files

Filename Size Changed Actions
olego.spec 2.44 KB almost 6 years ago Download File
olego.src.v1.0.8.tgz 291 KB almost 6 years ago Download File

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