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bioawk v030715 (Extension to Brian Kernighan's awk for dealing with several common biological data formats)

Bioawk is an extension to Brian Kernighan's awk acquired from [1], adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with the column names. It also adds a few built-in functions including, as of now, and(), or(), xor(), reverse() and revcomp(). See its man page for examples demonstrating the new functionality.

Source Files

Filename Size Changed Actions
bioawk-030715.zip 89.9 KB Download File
bioawk-1.0.0.tar.bz2 59.7 KB Download File
bioawk.spec 3.54 KB Download File

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