File garlic.spec of Package garlic

#
# spec file for package garlic
#
# Copyright (c) 2024 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#


%define _xorg7libs %{_lib}
%define _xorg7libs32 lib
%define _xorg7bin bin
%define _xorg7_mandir %{_mandir}
%define _xorg7pixmaps include
%define _xorg7libshare share
%define _xorg7_xkb %{_datadir}/X11/xkb
%define _xorg7_termcap %{_prefix}/lib/X11%{_sysconfdir}
%define _xorg7_serverincl %{_includedir}/xorg
%define _xorg7_fonts %{_datadir}/fonts
%define _xorg7_prefix %{_prefix}
Name:           garlic
Version:        1.6
Release:        0
Summary:        Molecular Graphics Visualization Tool
License:        LGPL-2.1-or-later
Group:          Productivity/Scientific/Chemistry
URL:            http://www.ccp14.ac.uk/ccp/web-mirrors/garlic/garlic/
Source0:        %{name}-%{version}.tar.bz2
Source1:        %{name}-%{version}-doc.tar.bz2
Source2:        %{name}.1.gz
Patch0:         %{name}-%{version}.patch
Patch1:         garlic-%{version}-libpath.patch
Patch2:         garlic-1.6-undef.patch
Patch3:         garlic-1.6-hardening.patch
BuildRequires:  fdupes
BuildRequires:  pkgconfig
BuildRequires:  update-desktop-files
BuildRequires:  pkgconfig(x11)
BuildRoot:      %{_tmppath}/%{name}-%{version}-build

%description
Garlic is an X Window System tool intended for the molecular
visualization of protein structure, DNA structure, and biological
macromolecules. It reads Brookhaven Protein Database (PDB) files.

%package doc
Summary:        Documentation for Garlic, a molecular graphics visualization tool
Group:          Documentation/HTML
%if 0%{?suse_version} >= 1120
BuildArch:      noarch
%endif

%description doc
Garlic is an X Window System tool intended for the molecular
visualization of protein structure, DNA structure, and biological
macromolecules.
This subpackage contains the full documentation to Garlic.

%prep
%setup -q -b 0
%setup -q -T -D -a 1
%patch -P 0 -p1
%patch -P 1 -p1
%patch -P 2 -p1
%patch -P 3 -p1
# fix executable permission on text files
cd garlic-1.6
chmod -x README favicon.ico tolower.script garlic.gif cookbook/garlic.gif precompiled_packages/garlic.gif
cd ..

%build
make %{?_smp_mflags} CC="gcc" CCOPT="%{optflags}" LIBPATH="-L/usr/%{_lib}"

%install
mkdir -p %{buildroot}/{usr/%{_xorg7bin},etc,%{_xorg7_mandir}/man1/}
cp -a garlic %{buildroot}%{_prefix}/%{_xorg7bin}/
cp -a .garlicrc %{buildroot}%{_sysconfdir}/garlicrc
mkdir -p %{buildroot}%{_datadir}/garlic
cp -a residues.pdb %{buildroot}%{_datadir}/garlic/residues.pdb
mv %{name}-%{version} html
install -m 644 %{SOURCE2} %{buildroot}/%{_xorg7_mandir}/man1/
mkdir -p %{buildroot}%{_datadir}/pixmaps
cp -a garlic.xpm %{buildroot}%{_datadir}/pixmaps/garlic.xpm
rm -rf html/source html/mouse/.xvpics
chmod 644 html/{README,bold_statement.html,docs.html,favicon.ico,garlic.gif,index.html,monster.gif,versions.html}
%suse_update_desktop_file -n -c %{name} "Garlic" Garlic garlic garlic Education Science Chemistry

# Can't do this via %%doc in %%files, because that runs too late,
# after %%fdupes.
mkdir -p "%{buildroot}/%{_defaultdocdir}/%{name}"
cp -a html 1mal.script 2fcp.script 2omf.script 2por.script \
	BUGS COPYING ENVIRONMENT HISTORY README TODO \
	"%{buildroot}/%{_defaultdocdir}/%{name}"

%fdupes %{buildroot}/%{_prefix}

%files
%defattr(-,root,root)
%dir %{_defaultdocdir}/%{name}/
%if 09%{?suse_version} >= 01500
%license %{_defaultdocdir}/%{name}/COPYING
%else
%doc %{_defaultdocdir}/%{name}/COPYING
%endif
%doc %{_xorg7_mandir}/man1/*
%config(noreplace) %{_sysconfdir}/garlicrc
%{_prefix}/%{_xorg7bin}/%{name}
%{_datadir}/garlic
%{_datadir}/garlic/residues.pdb
%{_datadir}/applications/%{name}.desktop
%{_datadir}/pixmaps/garlic.xpm

%files doc
%defattr(-,root,root)
%{_defaultdocdir}/%{name}/
%exclude %{_defaultdocdir}/%{name}/COPYING

%changelog