File netcdf.spec of Package netcdf
#
# spec file for package netcdf
#
# Copyright (c) 2025 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
%global flavor @BUILD_FLAVOR@%{nil}
%define _do_check 1
%define pname netcdf
%define sonum 19
%bcond_with valgrind_checks
# Keep disabled until properly set up on HDF5 library side
%bcond_with plugins
%if "%flavor" == ""
%define package_name %{pname}
ExclusiveArch: do_not_build
%endif
ExcludeArch: s390 s390x i586 %arm
%if "%{flavor}" == "serial"
%endif
%if "%{flavor}" == "mvapich2"
%define mpi_flavor mvapich2
%endif
%if "%{flavor}" == "openmpi4"
%define mpi_flavor openmpi4
%endif
%if "%{flavor}" == "openmpi5"
%define mpi_flavor openmpi5
ExcludeArch: %{ix86} %{arm}
%endif
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
%define package_name %{pname}%{p_suffix}
%define libname(s:) lib%{pname}%{-s*}%{?p_suffix}
%if %{without mpi}
%define p_prefix %_prefix
%define p_bindir %_bindir
%define p_libdir %_libdir
%define p_mandir %_mandir
%define p_includedir %_includedir
%else
%define p_prefix /usr/%{_lib}/mpi/gcc/%{mpi_flavor}
%define p_bindir %{p_prefix}/bin
%define p_libdir %{p_prefix}/%{_lib}
%define p_mandir %{p_prefix}/share/man
%define p_includedir %{p_prefix}/include
%endif
%define p_suffix %{?with_mpi:-%{mpi_flavor}}
%define hdf5_module_file %{?with_mpi:p}hdf5
%define purpose() This package contains %{?with_mpi:the %{mpi_flavor} version of }%{**}.
%if %{with valgrind_checks}
%ifnarch %ix86 x86_64 ppc ppc64 s390x armv7l aarch64
%{error: Vagrind not support on this platform!}
%else
%define valgrind_checks 1
%endif
%endif
Name: %{package_name}
Summary: Command-line programs for the NetCDF scientific data format
License: NetCDF
Group: Productivity/Scientific/Other
Version: 4.9.2
Release: 0
URL: https://www.unidata.ucar.edu/software/netcdf/
Source: https://downloads.unidata.ucar.edu/netcdf-c/%{version}/%{pname}-c-%{version}.tar.gz
Source1: nc-config.1.gz
Patch6: parseServers-Fix-uninitialized-variable-simplify-error-path.patch
Patch8: val_NC_check_voff-Fix-uninitialized-variable-warning.patch
Patch9: pr_att-Fix-uninitialized-variable.patch
Patch10: NCD4_dumpbytes-Add-missing-initialization-of-float-types.patch
Patch11: NCZ_def_var_chunking-make-sure-cs-is-set-before-used.patch
Patch12: Fix-spurious-uninitialized-variable-warning.patch
BuildRequires: autoconf
BuildRequires: automake
BuildRequires: gawk
BuildRequires: libcurl-devel >= 7.18.0
BuildRequires: libtool
BuildRequires: pkg-config
BuildRequires: unzip
BuildRequires: zlib-devel >= 1.2.5
BuildRequires: pkgconfig(libxml-2.0)
BuildRequires: pkgconfig(libzstd)
%if 0%{?valgrind_checks}
BuildRequires: valgrind
%endif
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
BuildRequires: hdf5%{p_suffix}-devel
BuildRequires: libhdf5_hl%{p_suffix}
%if %{with mpi}
BuildRequires: %{mpi_flavor}-devel
%endif
Requires: %{libname -s %{sonum}} = %{version}
%description
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
%{purpose utility functions for working with NetCDF files}
%package -n %{libname -s %{sonum}}
Summary: Shared libraries for the NetCDF scientific data format
Group: Productivity/Scientific/Other
# To avoid unresolvable errors due to multiple providers of the library
%{requires_eq \--whatprovides libhdf5%{p_suffix}}
%{requires_eq \--whatprovides libhdf5_hl%{p_suffix}}
%description -n %{libname -s %{sonum}}
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
NetCDF (network Common Data Form) is an interface for array-oriented
data access and a collection of software libraries
for C, Fortran, C++, and Perl that provides an implementation of the
interface. The NetCDF library also defines a machine-independent
format for representing scientific data. Together, the interface,
library, and format support the creation, access, and sharing of
scientific data.
NetCDF data is:
- Self-Describing: A NetCDF file includes information about the
data it contains.
- Network-transparent: A NetCDF file is represented in a form that
can be accessed by computers with different ways of storing
integers, characters, and floating-point numbers.
- Direct-access: A small subset of a large dataset may be accessed
efficiently, without first reading through all the preceding
data.
- Appendable: Data can be appended to a NetCDF dataset along one
dimension without copying the dataset or redefining its
structure. The structure of a NetCDF dataset can be changed,
though this sometimes causes the dataset to be copied.
- Sharable: One writer and multiple readers may simultaneously
access the same NetCDF file.
%{purpose the NetCDF runtime libraries}
%package devel-data
Summary: Development data files for %{name}
Group: Development/Libraries/C and C++
Provides: %{pname}-rpm-macros = %version
Conflicts: otherproviders(%{pname}-rpm-macros)
%description devel-data
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
This package contains generic files needed to create projects that use
any version of NetCDF.
%package devel
Summary: Development files for %{name}
Group: Development/Libraries/C and C++
Requires: %{libname -s %{sonum}} = %{version}
Requires: %{pname}-devel-data = %{version}
Requires: libcurl-devel >= 7.18.0
Requires: pkgconfig
Requires: zlib-devel >= 1.2.5
%{requires_eq hdf5%{p_suffix}-devel}
%{?with_mpi:Requires: %{mpi_flavor}-devel}
%description devel
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
%{purpose all files needed to create projects that use NetCDF}
%package devel-static
Summary: Static development files for %{name}
Group: Development/Libraries/C and C++
%{requires_eq hdf5%{p_suffix}-devel}
Requires: libcurl-devel >= 7.18.0
Requires: zlib-devel >= 1.2.5
%description devel-static
NetCDF is a set of software libraries and self-describing,
machine-independent data formats that support the creation, access,
and sharing of array-oriented scientific data.
%{purpose the static libraries for NetCDF}
%prep
%setup -q -n %{pname}-c-%{version}
%autopatch -p1
# Create baselib.conf dynamically
cat > %{_sourcedir}/baselibs.conf <<EOF
%{libname -s %{sonum}}
EOF
# Fix spurious-executable-perm RPMLINT warning
chmod a-x RELEASE_NOTES.md
%build
%global _lto_cflags %{_lto_cflags} -ffat-lto-objects
%if %{without mpi}
export CC=gcc CXX=g++ FC=gfortran
%else
source %{p_bindir}/mpivars.sh
export CC=mpicc
export FC=mpif90
export CXX=mpic++
%endif
autoreconf -fv
export CFLAGS="%{optflags} %{?with_hpc:-L$HDF5_LIB -I$HDF5_INC}"
export CXXFLAGS="%{optflags} %{?with_hpc:-L$HDF5_LIB -I$HDF5_INC}"
export FCFLAGS="%{optflags} %{?with_hpc:-L$HDF5_LIB -I$HDF5_INC}"
%configure \
--prefix=%{p_prefix} \
--bindir=%{p_bindir} \
--libdir=%{p_libdir} \
--includedir=%{p_includedir} \
--mandir=%{p_mandir} \
--enable-shared \
--enable-netcdf-4 \
--enable-dap \
--enable-extra-example-tests \
--disable-dap-remote-tests \
--with-pic \
--disable-doxygen \
--enable-static \
%if %{with plugins}
--enable-plugins \
--with-plugin-dir=%{p_libdir}/hdf5/plugin/
%else
--disable-plugins \
%endif
# --enable-logging \
%make_build
# Build tests without executing
%make_build check TESTS=""
%install
%if %{with mpi}
source %{p_bindir}/mpivars.sh
%endif
make install DESTDIR="%{buildroot}"
mkdir -p %{buildroot}%{_mandir}/man1
install -m644 %{S:1} %{buildroot}%{p_mandir}/man1
rm -f %{buildroot}%{p_libdir}/*.la
# install netcdf_par.h which is skipped when mpicc in not detected
install -m644 include/netcdf_par.h %{buildroot}%{p_includedir}/netcdf_par.h
%if %{without mpi}
# rpm macro for version checking
mkdir -p %{buildroot}%{_rpmmacrodir}
cat > %{buildroot}%{_rpmmacrodir}/macros.netcdf <<EOF
#
# RPM macros for hdf5 packaging
#
%_netcdf_sonum %{sonum}
%_netcdf_version %{version}
EOF
%endif
%if %{with mpi}
# Module files
mkdir -p %{buildroot}%{_datadir}/modules/%{pname}-%{mpi_flavor}
cat << EOF > %{buildroot}%{_datadir}/modules/%{pname}-%{mpi_flavor}/%version
#%%Module
proc ModulesHelp { } {
global dotversion
puts stderr "\tLoads the %{pname}-%{mpi_flavor} %version Environment"
}
module-whatis "Loads the %{pname}-%{mpi_flavor} %version Environment."
prepend-path PATH %{p_bindir}
prepend-path MANPATH %{p_mandir}
prepend-path LD_LIBRARY_PATH %{p_libdir}
prepend-path LIBRARY_PATH %{p_libdir}
prepend-path CPATH %{p_includedir}
prepend-path C_INCLUDE_PATH %{p_includedir}
prepend-path CPLUS_INCLUDE_PATH %{p_includedir}
EOF
%endif
%if 0%{?_do_check}
%check
%if %{with mpi}
. %{p_bindir}/mpivars.sh
%endif
%ifarch ppc64 s390x %ix86
# tst_netcdf4_4 fails on ix86 - https://github.com/Unidata/netcdf-c/issues/2433
make check || { echo -e "WARNING: ignore check error for ppc64/s390x/ix86"; }
%else
make check
%endif
%if 0%{?valgrind_checks}
make check-valgrind
%endif
%endif
%if %{with mpi}
%define ldconfig_args -N %p_libdir
%endif
%post -n %{libname -s %{sonum}}
/sbin/ldconfig %{?ldconfig_args}
%postun -n %{libname -s %{sonum}}
/sbin/ldconfig %{?ldconfig_args}
%files
%license COPYRIGHT
%doc README.md RELEASE_NOTES.md
%{p_bindir}/*
%exclude %{p_bindir}/nc-config
%if "%{flavor}" != "serial"
%dir %{p_mandir}/man1
%endif
%{p_mandir}/man1/*
%files -n %{libname -s %{sonum}}
%if %{with mpi}
%dir %{_datadir}/modules
%{_datadir}/modules/%{pname}-%{mpi_flavor}
%endif
%{p_libdir}/libnetcdf.so.%{sonum}*
%if %{without mpi}
%files devel-data
%{_rpmmacrodir}/macros.netcdf
%endif
%files devel
%{p_bindir}/nc-config
%{p_includedir}/*
%{p_libdir}/*.so
%{p_libdir}/pkgconfig/netcdf.pc
%if "%{flavor}" != "serial"
%dir %{p_mandir}/man3
%endif
%{p_mandir}/man3/*
%{p_libdir}/libnetcdf.settings
%files devel-static
%{p_libdir}/libnetcdf.a
%changelog
