File R-BayesBrainMap.spec of Package R-BayesBrainMap

# Automatically generated by CRAN2OBS
# 
# Spec file for package BayesBrainMap 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  BayesBrainMap 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.3 
Release:        0 
Summary:        Estimate Brain Networks and Connectivity with Population-Derived Priors 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         BayesBrainMap_0.1.3.tar.gz 
Requires:       R-base 
Requires:	R-abind
Requires:	R-fMRItools
Requires:	R-fMRIscrub
Requires:	R-foreach
Requires:	R-matrixStats
Requires:	R-pesel
Requires:	R-SQUAREM
Requires:	R-cellWise
Requires:	R-e1071
Requires:	R-robustbase
Requires:	R-expm
Requires:	R-gamlss
Requires:	R-iterators
Requires:	R-reshape2
Requires:	R-scales
Requires:	R-ggplot2
Requires:	R-gridExtra
Requires:	R-rrcov
Requires:	R-svd
Requires:	R-shape
Requires:	R-Rcpp
Requires:	R-RcppArmadillo
Requires:	R-proxy
Requires:	R-gamlss.data
Requires:	R-gamlss.dist
Requires:	R-DEoptimR
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-plyr
Requires:	R-stringr
Requires:	R-mvtnorm
Requires:	R-pcaPP
Requires:	R-farver
Requires:	R-glue
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-magrittr
Requires:	R-stringi
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-abind
BuildRequires: 	R-fMRItools
BuildRequires: 	R-fMRIscrub
BuildRequires: 	R-foreach
BuildRequires: 	R-matrixStats
BuildRequires: 	R-pesel
BuildRequires: 	R-SQUAREM
BuildRequires: 	R-cellWise
BuildRequires: 	R-e1071
BuildRequires: 	R-robustbase
BuildRequires: 	R-expm
BuildRequires: 	R-gamlss
BuildRequires: 	R-iterators
BuildRequires: 	R-reshape2
BuildRequires: 	R-scales
BuildRequires: 	R-ggplot2
BuildRequires: 	R-gridExtra
BuildRequires: 	R-rrcov
BuildRequires: 	R-svd
BuildRequires: 	R-shape
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-proxy
BuildRequires: 	R-gamlss.data
BuildRequires: 	R-gamlss.dist
BuildRequires: 	R-DEoptimR
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-plyr
BuildRequires: 	R-stringr
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-pcaPP
BuildRequires: 	R-farver
BuildRequires: 	R-glue
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-magrittr
BuildRequires: 	R-stringi
 
Suggests:	R-ciftiTools
Suggests:	R-excursions
Suggests:	R-RNifti
Suggests:	R-oro.nifti
Suggests:	R-gifti
Suggests:	R-doParallel
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-INLA
Suggests:	R-testthat
%description 
Implements Bayesian brain mapping models, including the prior ICA 
(independent components analysis) model proposed in Mejia et al. (2020) 
<doi:10.1080/01621459.2019.1679638> and the spatial prior ICA model 
proposed in proposed in Mejia et al. (2022) 
<doi:10.1080/10618600.2022.2104289>. Both models estimate subject-level 
brain as deviations from known population-level networks, which are 
estimated using standard ICA algorithms. Both models employ an 
expectation-maximization algorithm for estimation of the latent brain 
networks and unknown model parameters. Includes direct support for 
'CIFTI', 'GIFTI', and 'NIFTI' neuroimaging file formats. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/REFERENCES
%{rlibdir}/%{packname}/REFERENCES.bib
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog