File R-CloneSeeker.spec of Package R-CloneSeeker

# Automatically generated by CRAN2OBS
# 
# Spec file for package CloneSeeker 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
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# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  CloneSeeker 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.13 
Release:        0 
Summary:        Seeking and Finding Clones in Copy Number and Sequencing Data 
Group:          Development/Libraries/Other 
License:        Apache License (== 2.0) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         CloneSeeker_1.0.13.tar.gz 
Requires:       R-base 
Requires:	R-combinat
Requires:	R-mc2d
Requires:	R-quantmod
Requires:	R-mvtnorm
Requires:	R-ggplot2
Requires:	R-ggpubr
Requires:	R-xts
Requires:	R-zoo
Requires:	R-TTR
Requires:	R-curl
Requires:	R-jsonlite
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-ggrepel
Requires:	R-ggsci
Requires:	R-tidyr
Requires:	R-purrr
Requires:	R-dplyr
Requires:	R-cowplot
Requires:	R-ggsignif
Requires:	R-gridExtra
Requires:	R-glue
Requires:	R-polynom
Requires:	R-rstatix
Requires:	R-tibble
Requires:	R-magrittr
Requires:	R-generics
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tidyselect
Requires:	R-Rcpp
Requires:	R-broom
Requires:	R-corrplot
Requires:	R-car
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-pkgconfig
Requires:	R-stringr
Requires:	R-cpp11
Requires:	R-backports
Requires:	R-carData
Requires:	R-abind
Requires:	R-Formula
Requires:	R-pbkrtest
Requires:	R-quantreg
Requires:	R-lme4
Requires:	R-utf8
Requires:	R-stringi
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-RcppEigen
Requires:	R-numDeriv
Requires:	R-doBy
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-Deriv
Requires:	R-modelr
Requires:	R-microbenchmark
Requires:	R-Rdpack
Requires:	R-rbibutils
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-combinat
BuildRequires: 	R-mc2d
BuildRequires: 	R-quantmod
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-ggplot2
BuildRequires: 	R-ggpubr
BuildRequires: 	R-xts
BuildRequires: 	R-zoo
BuildRequires: 	R-TTR
BuildRequires: 	R-curl
BuildRequires: 	R-jsonlite
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-ggrepel
BuildRequires: 	R-ggsci
BuildRequires: 	R-tidyr
BuildRequires: 	R-purrr
BuildRequires: 	R-dplyr
BuildRequires: 	R-cowplot
BuildRequires: 	R-ggsignif
BuildRequires: 	R-gridExtra
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BuildRequires: 	R-abind
BuildRequires: 	R-Formula
BuildRequires: 	R-pbkrtest
BuildRequires: 	R-quantreg
BuildRequires: 	R-lme4
BuildRequires: 	R-utf8
BuildRequires: 	R-stringi
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-numDeriv
BuildRequires: 	R-doBy
BuildRequires: 	R-SparseM
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-Deriv
BuildRequires: 	R-modelr
BuildRequires: 	R-microbenchmark
BuildRequires: 	R-Rdpack
BuildRequires: 	R-rbibutils
 
%description 
Defines the classes and functions used to simulate and to analyze data 
sets describing copy number variants and, optionally, sequencing 
mutations in order to detect clonal subsets. See Zucker et al. (2019) 
<doi:10.1093/bioinformatics/btz057>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/auxiliary
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog