File R-Colossus.spec of Package R-Colossus
# Automatically generated by CRAN2OBS
#
# Spec file for package Colossus
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany.
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# published by the Open Source Initiative.
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%global packname Colossus
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.4.10
Release: 0
Summary: "Risk Model Regression and Analysis with Complex Non-Linear Models"
Group: Development/Libraries/Other
License: GPL (>= 3)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: Colossus_1.4.10.tar.gz
Requires: R-base
Requires: R-Rcpp
Requires: R-data.table
Requires: R-rlang
Requires: R-callr
Requires: R-stringr
Requires: R-processx
Requires: R-dplyr
Requires: R-tibble
Requires: R-lubridate
Requires: R-RcppEigen
Requires: R-testthat
Requires: R-R6
Requires: R-cli
Requires: R-generics
Requires: R-glue
Requires: R-lifecycle
Requires: R-magrittr
Requires: R-pillar
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-timechange
Requires: R-ps
Requires: R-stringi
Requires: R-brio
Requires: R-desc
Requires: R-evaluate
Requires: R-jsonlite
Requires: R-pkgload
Requires: R-praise
Requires: R-waldo
Requires: R-withr
Requires: R-pkgconfig
Requires: R-utf8
Requires: R-fs
Requires: R-pkgbuild
Requires: R-rprojroot
Requires: R-cpp11
Requires: R-diffobj
Requires: R-crayon
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
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# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-Rcpp-devel
BuildRequires: R-data.table
BuildRequires: R-rlang
BuildRequires: R-callr
BuildRequires: R-stringr
BuildRequires: R-processx
BuildRequires: R-dplyr
BuildRequires: R-tibble
BuildRequires: R-lubridate
BuildRequires: R-RcppEigen-devel
BuildRequires: R-testthat
BuildRequires: R-R6
BuildRequires: R-cli
BuildRequires: R-generics
BuildRequires: R-glue
BuildRequires: R-lifecycle
BuildRequires: R-magrittr
BuildRequires: R-pillar
BuildRequires: R-tidyselect
BuildRequires: R-vctrs
BuildRequires: R-timechange
BuildRequires: R-ps
BuildRequires: R-stringi
BuildRequires: R-brio
BuildRequires: R-desc
BuildRequires: R-evaluate
BuildRequires: R-jsonlite
BuildRequires: R-pkgload
BuildRequires: R-praise
BuildRequires: R-waldo
BuildRequires: R-withr
BuildRequires: R-pkgconfig
BuildRequires: R-utf8
BuildRequires: R-fs
BuildRequires: R-pkgbuild
BuildRequires: R-rprojroot
BuildRequires: R-cpp11-devel
BuildRequires: R-diffobj
BuildRequires: R-crayon
BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-knitr
Suggests: R-rmarkdown
Suggests: R-testthat
Suggests: R-xml2
Suggests: R-pandoc
Suggests: R-spelling
Suggests: R-ggplot2
%description
Performs survival analysis using general non-linear models. Risk models
can be the sum or product of terms. Each term is the product of
exponential/linear functions of covariates. Additionally sub-terms can
be defined as a sum of exponential, linear threshold, and step
functions. Cox Proportional hazards
<https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson
<https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Gray
competing risks
<https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis>
regression are supported. This work was sponsored by NASA Grants
80NSSC19M0161 and 80NSSC23M0129 through a subcontract from the National
Council on Radiation Protection and Measurements (NCRP). The computing
for this project was performed on the Beocat Research Cluster at Kansas
State University, which is funded in part by NSF grants CNS-1006860,
EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH
P20GM113109.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%changelog
