File R-DamageDetective.spec of Package R-DamageDetective

# Automatically generated by CRAN2OBS
# 
# Spec file for package DamageDetective 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  DamageDetective 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.0 
Release:        0 
Summary:        Detecting Damaged Cells in Single-Cell RNA Sequencing Data 
Group:          Development/Libraries/Other 
License:        AGPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         DamageDetective_1.0.0.tar.gz 
Requires:       R-base 
Requires:	R-cowplot
Requires:	R-dplyr
Requires:	R-ggplot2
Requires:	R-ggpubr
Requires:	R-patchwork
Requires:	R-scales
Requires:	R-RcppHNSW
Requires:	R-rlang
Requires:	R-tidyr
Requires:	R-withr
Requires:	R-gtable
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-isoband
Requires:	R-S7
Requires:	R-ggrepel
Requires:	R-ggsci
Requires:	R-purrr
Requires:	R-ggsignif
Requires:	R-gridExtra
Requires:	R-polynom
Requires:	R-rstatix
Requires:	R-farver
Requires:	R-Rcpp
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-stringr
Requires:	R-cpp11
Requires:	R-utf8
Requires:	R-broom
Requires:	R-corrplot
Requires:	R-car
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-backports
Requires:	R-carData
Requires:	R-abind
Requires:	R-Formula
Requires:	R-pbkrtest
Requires:	R-quantreg
Requires:	R-lme4
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-RcppEigen
Requires:	R-numDeriv
Requires:	R-doBy
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-Deriv
Requires:	R-modelr
Requires:	R-microbenchmark
Requires:	R-Rdpack
Requires:	R-rbibutils
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-cowplot
BuildRequires: 	R-dplyr
BuildRequires: 	R-ggplot2
BuildRequires: 	R-ggpubr
BuildRequires: 	R-patchwork
BuildRequires: 	R-scales
BuildRequires: 	R-RcppHNSW
BuildRequires: 	R-rlang
BuildRequires: 	R-tidyr
BuildRequires: 	R-withr
BuildRequires: 	R-gtable
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-ggrepel
BuildRequires: 	R-ggsci
BuildRequires: 	R-purrr
BuildRequires: 	R-ggsignif
BuildRequires: 	R-gridExtra
BuildRequires: 	R-polynom
BuildRequires: 	R-rstatix
BuildRequires: 	R-farver
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-stringr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-utf8
BuildRequires: 	R-broom
BuildRequires: 	R-corrplot
BuildRequires: 	R-car
BuildRequires: 	R-stringi
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-backports
BuildRequires: 	R-carData
BuildRequires: 	R-abind
BuildRequires: 	R-Formula
BuildRequires: 	R-pbkrtest
BuildRequires: 	R-quantreg
BuildRequires: 	R-lme4
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-numDeriv
BuildRequires: 	R-doBy
BuildRequires: 	R-SparseM
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-Deriv
BuildRequires: 	R-modelr
BuildRequires: 	R-microbenchmark
BuildRequires: 	R-Rdpack
BuildRequires: 	R-rbibutils
 
Suggests:	R-Seurat
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-spelling
%description 
Detects and filters damaged cells in single-cell RNA sequencing 
(scRNA-seq) data using a novel approach inspired by 'DoubletFinder'. 
Damage is detected by measuring the extent to which cells deviate from 
artificially damaged profiles of themselves, simulated through the 
probabilistic escape of cytoplasmic RNA. As output, a damage score 
ranging from 0 to 1 is given for each cell providing an intuitive scale 
for filtering that is standardised across cell types, samples, and 
experiments. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog