File R-EmbedSOM.spec of Package R-EmbedSOM
# Automatically generated by CRAN2OBS
#
# Spec file for package EmbedSOM
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
#
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global packname EmbedSOM
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 2.2
Release: 0
Summary: Fast Embedding Guided by Self-Organizing Map
Group: Development/Libraries/Other
License: GPL (>= 3)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: EmbedSOM_2.2.tar.gz
Requires: R-base
Requires: R-ggplot2
Requires: R-igraph
Requires: R-Rtsne
Requires: R-umap
Requires: R-uwot
Requires: R-cli
Requires: R-glue
Requires: R-gtable
Requires: R-isoband
Requires: R-lifecycle
Requires: R-rlang
Requires: R-scales
Requires: R-tibble
Requires: R-vctrs
Requires: R-withr
Requires: R-magrittr
Requires: R-pkgconfig
Requires: R-cpp11
Requires: R-Rcpp
Requires: R-openssl
Requires: R-reticulate
Requires: R-RSpectra
Requires: R-FNN
Requires: R-irlba
Requires: R-RcppAnnoy
Requires: R-dqrng
Requires: R-RcppProgress
Requires: R-BH
Requires: R-sitmo
Requires: R-askpass
Requires: R-RcppTOML
Requires: R-here
Requires: R-jsonlite
Requires: R-png
Requires: R-rappdirs
Requires: R-RcppEigen
Requires: R-farver
Requires: R-labeling
Requires: R-munsell
Requires: R-R6
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-fansi
Requires: R-pillar
Requires: R-sys
Requires: R-rprojroot
Requires: R-colorspace
Requires: R-utf8
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-ggplot2
BuildRequires: R-igraph
BuildRequires: R-Rtsne
BuildRequires: R-umap
BuildRequires: R-uwot-devel
BuildRequires: R-cli
BuildRequires: R-glue
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-lifecycle
BuildRequires: R-rlang
BuildRequires: R-scales
BuildRequires: R-tibble
BuildRequires: R-vctrs
BuildRequires: R-withr
BuildRequires: R-magrittr
BuildRequires: R-pkgconfig
BuildRequires: R-cpp11-devel
BuildRequires: R-Rcpp-devel
BuildRequires: R-openssl
BuildRequires: R-reticulate
BuildRequires: R-RSpectra-devel
BuildRequires: R-FNN
BuildRequires: R-irlba
BuildRequires: R-RcppAnnoy
BuildRequires: R-dqrng
BuildRequires: R-RcppProgress
BuildRequires: R-BH-devel
BuildRequires: R-sitmo
BuildRequires: R-askpass
BuildRequires: R-RcppTOML-devel
BuildRequires: R-here
BuildRequires: R-jsonlite
BuildRequires: R-png
BuildRequires: R-rappdirs
BuildRequires: R-RcppEigen-devel
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-munsell
BuildRequires: R-R6
BuildRequires: R-RColorBrewer
BuildRequires: R-viridisLite
BuildRequires: R-fansi
BuildRequires: R-pillar
BuildRequires: R-sys
BuildRequires: R-rprojroot
BuildRequires: R-colorspace
BuildRequires: R-utf8
BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-knitr
Suggests: R-rmarkdown
%description
Provides a smooth mapping of multidimensional points into
low-dimensional space defined by a self-organizing map. Designed to
work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al.
(2019) <doi:10.12688/f1000research.21642.1>.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%changelog