File R-EpiModel.spec of Package R-EpiModel
# Automatically generated by CRAN2OBS
#
# Spec file for package EpiModel
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
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%global packname EpiModel
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 2.6.0
Release: 0
Summary: Mathematical Modeling of Infectious Disease Dynamics
Group: Development/Libraries/Other
License: GPL-3
URL: http://cran.r-project.org/web/packages/%{packname}
Source: EpiModel_2.6.0.tar.gz
Requires: R-base
Requires: R-deSolve
Requires: R-networkDynamic
Requires: R-tergm
Requires: R-statnet.common
Requires: R-future
Requires: R-future.apply
Requires: R-collections
Requires: R-ergm
Requires: R-network
Requires: R-RColorBrewer
Requires: R-ape
Requires: R-lazyeval
Requires: R-ggplot2
Requires: R-tibble
Requires: R-rlang
Requires: R-dplyr
Requires: R-coda
Requires: R-networkLite
Requires: R-Rcpp
Requires: R-digest
Requires: R-cli
Requires: R-generics
Requires: R-glue
Requires: R-lifecycle
Requires: R-magrittr
Requires: R-pillar
Requires: R-R6
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-robustbase
Requires: R-trust
Requires: R-lpSolveAPI
Requires: R-rle
Requires: R-purrr
Requires: R-memoise
Requires: R-Rdpack
Requires: R-knitr
Requires: R-stringr
Requires: R-globals
Requires: R-listenv
Requires: R-parallelly
Requires: R-gtable
Requires: R-isoband
Requires: R-S7
Requires: R-scales
Requires: R-withr
Requires: R-ergm.multi
Requires: R-pkgconfig
Requires: R-cpp11
Requires: R-evaluate
Requires: R-highr
Requires: R-xfun
Requires: R-yaml
Requires: R-cachem
Requires: R-utf8
Requires: R-rbibutils
Requires: R-DEoptimR
Requires: R-farver
Requires: R-labeling
Requires: R-viridisLite
Requires: R-stringi
Requires: R-fastmap
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-deSolve-devel
BuildRequires: R-networkDynamic
BuildRequires: R-tergm
BuildRequires: R-statnet.common
BuildRequires: R-future
BuildRequires: R-future.apply
BuildRequires: R-collections
BuildRequires: R-ergm-devel
BuildRequires: R-network
BuildRequires: R-RColorBrewer
BuildRequires: R-ape
BuildRequires: R-lazyeval
BuildRequires: R-ggplot2
BuildRequires: R-tibble
BuildRequires: R-rlang
BuildRequires: R-dplyr
BuildRequires: R-coda
BuildRequires: R-networkLite
BuildRequires: R-Rcpp-devel
BuildRequires: R-digest
BuildRequires: R-cli
BuildRequires: R-generics
BuildRequires: R-glue
BuildRequires: R-lifecycle
BuildRequires: R-magrittr
BuildRequires: R-pillar
BuildRequires: R-R6
BuildRequires: R-tidyselect
BuildRequires: R-vctrs
BuildRequires: R-robustbase
BuildRequires: R-trust
BuildRequires: R-lpSolveAPI-devel
BuildRequires: R-rle
BuildRequires: R-purrr
BuildRequires: R-memoise
BuildRequires: R-Rdpack
BuildRequires: R-knitr
BuildRequires: R-stringr
BuildRequires: R-globals
BuildRequires: R-listenv
BuildRequires: R-parallelly
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-S7
BuildRequires: R-scales
BuildRequires: R-withr
BuildRequires: R-ergm.multi
BuildRequires: R-pkgconfig
BuildRequires: R-cpp11-devel
BuildRequires: R-evaluate
BuildRequires: R-highr
BuildRequires: R-xfun
BuildRequires: R-yaml
BuildRequires: R-cachem
BuildRequires: R-utf8
BuildRequires: R-rbibutils
BuildRequires: R-DEoptimR
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-viridisLite
BuildRequires: R-stringi
BuildRequires: R-fastmap
BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-bslib
Suggests: R-DT
Suggests: R-ergm.ego
Suggests: R-egor
Suggests: R-knitr
Suggests: R-ndtv
Suggests: R-plotly
Suggests: R-rmarkdown
Suggests: R-shiny
Suggests: R-testthat
Suggests: R-progressr
Suggests: R-tidyr
%description
Tools for simulating mathematical models of infectious disease
dynamics. Epidemic model classes include deterministic compartmental
models, stochastic individual-contact models, and stochastic network
models. Network models use the robust statistical methods of
exponential-family random graph models (ERGMs) from the Statnet suite
of software packages in R. Standard templates for epidemic modeling
include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims.
Full methods for EpiModel are detailed in Jenness et al. (2018,
<doi:10.18637/jss.v084.i08>).
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/shiny
%changelog
