File R-FastJM.spec of Package R-FastJM
# Automatically generated by CRAN2OBS
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# Spec file for package FastJM
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
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%global packname FastJM
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.5.2
Release: 0
Summary: Semi-Parametric Joint Modeling of Longitudinal and Survival Data
Group: Development/Libraries/Other
License: GPL (>= 3)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: FastJM_1.5.2.tar.gz
Requires: R-base
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# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
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BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-testthat
Suggests: R-spelling
%description
Maximum likelihood estimation for the semi-parametric joint modeling of
competing risks and (multivariate) longitudinal data applying
customized linear scan algorithms, proposed by Li and colleagues (2022)
<doi:10.1155/2022/1362913>. The time-to-event data is modelled using a
(cause-specific) Cox proportional hazards regression model with
time-fixed covariates. The longitudinal outcome is modelled using a
linear mixed effects model. The association is captured by shared
random effects. The model is estimated using an Expectation
Maximization algorithm.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%changelog
