File R-GWsignif.spec of Package R-GWsignif

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File R-GWsignif.spec of Package R-GWsignif

# Automatically generated by CRAN2OBS
# 
# spec file for package GWsignif 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2020 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  GWsignif 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.2 
Release:        0 
Summary:        Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         GWsignif_1.2.tar.gz 
Requires:       R-base 
 
%if 0%{?sle_version} > 120400 || 0%{?is_opensuse} 
# Three others commonly needed 
BuildRequires:  tex(ae.sty) 
BuildRequires:  tex(fancyvrb.sty) 
BuildRequires:  tex(inconsolata.sty) 
BuildRequires:  tex(natbib.sty) 
%else 
BuildRequires:  texlive 
%endif 
BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
 
%description 
The correlations and linkage disequilibrium between tests can vary as a 
function of minor allele frequency thresholds used to filter variants, 
and also varies with different choices of test statistic for 
region-based tests. Appropriate genome-wide significance thresholds can 
be estimated empirically through permutation on only a small proportion 
of the whole genome. 
 
%prep 
%setup -q -c -n %{packname} 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog

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