File R-HMC.spec of Package R-HMC

# Automatically generated by CRAN2OBS
# 
# Spec file for package HMC 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
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# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
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%global packname  HMC 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.2 
Release:        0 
Summary:        High-Dimensional Mean Comparison with Projection and Cross-Fitting 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         HMC_1.2.tar.gz 
Requires:       R-base 
Requires:	R-glmnet
Requires:	R-irlba
Requires:	R-PMA
Requires:	R-grpreg
Requires:	R-foreach
Requires:	R-shape
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-iterators
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-glmnet
BuildRequires: 	R-irlba
BuildRequires: 	R-PMA
BuildRequires: 	R-grpreg
BuildRequires: 	R-foreach
BuildRequires: 	R-shape
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-iterators
 
%description 
Provides interpretable high-dimensional mean comparison methods (HMC). 
For example, users can apply these methods to assess the difference in 
gene expression between two treatment groups. It is not a gene-by-gene 
comparison. Instead, the methods focus on the interplay between 
features and identify those that are predictive of the group label. The 
tests are valid frequentist procedures and yield sparse estimates 
indicating which features contribute to the group differences. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog