File R-JointAI.spec of Package R-JointAI

# Automatically generated by CRAN2OBS
# 
# Spec file for package JointAI 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  JointAI 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.0 
Release:        0 
Summary:        Joint Analysis and Imputation of Incomplete Data 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         JointAI_1.1.0.tar.gz 
Requires:       R-base 
Requires:	R-rjags
Requires:	R-mcmcse
Requires:	R-coda
Requires:	R-rlang
Requires:	R-future
Requires:	R-mathjaxr
Requires:	R-digest
Requires:	R-globals
Requires:	R-listenv
Requires:	R-parallelly
Requires:	R-ellipse
Requires:	R-Rcpp
Requires:	R-fftwtools
Requires:	R-testthat
Requires:	R-RcppArmadillo
Requires:	R-brio
Requires:	R-callr
Requires:	R-cli
Requires:	R-desc
Requires:	R-evaluate
Requires:	R-jsonlite
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pkgload
Requires:	R-praise
Requires:	R-processx
Requires:	R-ps
Requires:	R-R6
Requires:	R-waldo
Requires:	R-withr
Requires:	R-fs
Requires:	R-glue
Requires:	R-pkgbuild
Requires:	R-rprojroot
Requires:	R-diffobj
Requires:	R-crayon
Requires:	jags
Requires:	jags-devel
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-rjags
BuildRequires: 	R-mcmcse
BuildRequires: 	R-coda
BuildRequires: 	R-rlang
BuildRequires: 	R-future
BuildRequires: 	R-mathjaxr
BuildRequires: 	R-digest
BuildRequires: 	R-globals
BuildRequires: 	R-listenv
BuildRequires: 	R-parallelly
BuildRequires: 	R-ellipse
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-fftwtools
BuildRequires: 	R-testthat
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-brio
BuildRequires: 	R-callr
BuildRequires: 	R-cli
BuildRequires: 	R-desc
BuildRequires: 	R-evaluate
BuildRequires: 	R-jsonlite
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pkgload
BuildRequires: 	R-praise
BuildRequires: 	R-processx
BuildRequires: 	R-ps
BuildRequires: 	R-R6
BuildRequires: 	R-waldo
BuildRequires: 	R-withr
BuildRequires: 	R-fs
BuildRequires: 	R-glue
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-rprojroot
BuildRequires: 	R-diffobj
BuildRequires: 	R-crayon
BuildRequires: 	jags
BuildRequires: 	jags-devel
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-bookdown
Suggests:	R-ggplot2
Suggests:	R-corrplot
Suggests:	R-ggpubr
Suggests:	R-svglite
Suggests:	R-testthat
Suggests:	R-covr
%description 
Joint analysis and imputation of incomplete data in the Bayesian 
framework, using (generalized) linear (mixed) models and extensions 
there of, survival models, or joint models for longitudinal and 
survival data, as described in Erler, Rizopoulos and Lesaffre (2021) 
<doi:10.18637/jss.v100.i20>. Incomplete covariates, if present, are 
automatically imputed. The package performs some preprocessing of the 
data and creates a 'JAGS' model, which will then automatically be 
passed to 'JAGS' <https://mcmc-jags.sourceforge.io/> with the help of 
the package 'rjags'. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog