File R-KMD.spec of Package R-KMD
# Automatically generated by CRAN2OBS
#
# Spec file for package KMD
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
#
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global packname KMD
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 0.1.0
Release: 0
Summary: Kernel Measure of Multi-Sample Dissimilarity
Group: Development/Libraries/Other
License: GPL-3
URL: http://cran.r-project.org/web/packages/%{packname}
Source: KMD_0.1.0.tar.gz
Requires: R-base
Requires: R-data.table
Requires: R-RANN
Requires: R-proxy
Requires: R-mlpack
Requires: R-igraph
Requires: R-cli
Requires: R-lifecycle
Requires: R-magrittr
Requires: R-pkgconfig
Requires: R-rlang
Requires: R-vctrs
Requires: R-cpp11
Requires: R-Rcpp
Requires: R-RcppArmadillo
Requires: R-RcppEnsmallen
Requires: R-glue
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-data.table
BuildRequires: R-RANN
BuildRequires: R-proxy
BuildRequires: R-mlpack-devel
BuildRequires: R-igraph
BuildRequires: R-cli
BuildRequires: R-lifecycle
BuildRequires: R-magrittr
BuildRequires: R-pkgconfig
BuildRequires: R-rlang
BuildRequires: R-vctrs
BuildRequires: R-cpp11-devel
BuildRequires: R-Rcpp-devel
BuildRequires: R-RcppArmadillo-devel
BuildRequires: R-RcppEnsmallen-devel
BuildRequires: R-glue
%description
Implementations of the kernel measure of multi-sample dissimilarity
(KMD) between several samples using K-nearest neighbor graphs and
minimum spanning trees. The KMD measures the dissimilarity between
multiple samples, based on the observations from them. It converges to
the population quantity (depending on the kernel) which is between 0
and 1. A small value indicates the multiple samples are from the same
distribution, and a large value indicates the corresponding
distributions are different. The population quantity is 0 if and only
if all distributions are the same, and 1 if and only if all
distributions are mutually singular. The package also implements the
tests based on KMD for H0: the M distributions are equal against H1:
not all the distributions are equal. Both permutation test and
asymptotic test are available. These tests are consistent against all
alternatives where at least two samples have different distributions.
For more details on KMD and the associated tests, see Huang, Z. and B.
Sen (2022) <arXiv:2210.00634>.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%changelog
