File R-KinMixLite.spec of Package R-KinMixLite

# Automatically generated by CRAN2OBS
# 
# Spec file for package KinMixLite 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
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# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  KinMixLite 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        2.1.1 
Release:        0 
Summary:        Inference About Relationships from DNA Mixtures 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         KinMixLite_2.1.1.tar.gz 
Requires:       R-base 
Requires:	R-DNAmixturesLite
Requires:	R-gRaven
Requires:	R-statnet.common
Requires:	R-gRbase
Requires:	R-Rsolnp
Requires:	R-numDeriv
Requires:	R-ribd
Requires:	R-pedtools
Requires:	R-gRain
Requires:	R-rlang
Requires:	R-igraph
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-RcppArmadillo
Requires:	R-kinship2
Requires:	R-pedmut
Requires:	R-glue
Requires:	R-slam
Requires:	R-truncnorm
Requires:	R-coda
Requires:	R-broom
Requires:	R-cli
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pkgconfig
Requires:	R-vctrs
Requires:	R-cpp11
Requires:	R-quadprog
Requires:	R-knitr
Requires:	R-lpSolve
Requires:	R-backports
Requires:	R-dplyr
Requires:	R-generics
Requires:	R-purrr
Requires:	R-stringr
Requires:	R-tibble
Requires:	R-tidyr
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-yaml
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tidyselect
Requires:	R-stringi
Requires:	R-utf8
Requires:	R-withr
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-DNAmixturesLite
BuildRequires: 	R-gRaven
BuildRequires: 	R-statnet.common
BuildRequires: 	R-gRbase
BuildRequires: 	R-Rsolnp
BuildRequires: 	R-numDeriv
BuildRequires: 	R-ribd
BuildRequires: 	R-pedtools
BuildRequires: 	R-gRain
BuildRequires: 	R-rlang
BuildRequires: 	R-igraph
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-kinship2
BuildRequires: 	R-pedmut
BuildRequires: 	R-glue
BuildRequires: 	R-slam
BuildRequires: 	R-truncnorm
BuildRequires: 	R-coda
BuildRequires: 	R-broom
BuildRequires: 	R-cli
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-vctrs
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-quadprog
BuildRequires: 	R-knitr
BuildRequires: 	R-lpSolve
BuildRequires: 	R-backports
BuildRequires: 	R-dplyr
BuildRequires: 	R-generics
BuildRequires: 	R-purrr
BuildRequires: 	R-stringr
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyr
BuildRequires: 	R-evaluate
BuildRequires: 	R-highr
BuildRequires: 	R-xfun
BuildRequires: 	R-yaml
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tidyselect
BuildRequires: 	R-stringi
BuildRequires: 	R-utf8
BuildRequires: 	R-withr
 
%description 
Methods for inference about relationships between contributors to a DNA 
mixture and other individuals of known genotype: a basic example would 
be testing whether a contributor to a mixture is the father of a child 
of known genotype. This provides most of the functionality of the 
'KinMix' package, but with some loss of efficiency and restriction on 
problem size, as the latter uses 'RHugin' as the Bayes net engine, 
while this package uses 'gRain'. The package implements the methods 
introduced in Green, P. J. and Mortera, J. (2017) 
<doi:10.1016/j.fsigen.2017.02.001> and Green, P. J. and Mortera, J. 
(2021) <doi:10.1111/rssc.12498>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/demo
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog