File R-LCAextend.spec of Package R-LCAextend
# Automatically generated by CRAN2OBS
#
# Spec file for package LCAextend
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
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# published by the Open Source Initiative.
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%global packname LCAextend
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.3
Release: 0
Summary: Latent Class Analysis (LCA) with Familial Dependence in Extended Pedigrees
Group: Development/Libraries/Other
License: GPL
URL: http://cran.r-project.org/web/packages/%{packname}
Source: LCAextend_1.3.tar.gz
Requires: R-base
Requires: R-mvtnorm
Requires: R-rms
Requires: R-kinship2
Requires: R-quadprog
Requires: R-knitr
Requires: R-Hmisc
Requires: R-quantreg
Requires: R-ggplot2
Requires: R-SparseM
Requires: R-polspline
Requires: R-multcomp
Requires: R-htmlTable
Requires: R-htmltools
Requires: R-digest
Requires: R-colorspace
Requires: R-scales
Requires: R-cli
Requires: R-gtable
Requires: R-isoband
Requires: R-lifecycle
Requires: R-rlang
Requires: R-S7
Requires: R-vctrs
Requires: R-withr
Requires: R-gridExtra
Requires: R-data.table
Requires: R-viridis
Requires: R-base64enc
Requires: R-rmarkdown
Requires: R-Formula
Requires: R-stringr
Requires: R-magrittr
Requires: R-checkmate
Requires: R-htmlwidgets
Requires: R-rstudioapi
Requires: R-fastmap
Requires: R-evaluate
Requires: R-highr
Requires: R-xfun
Requires: R-yaml
Requires: R-TH.data
Requires: R-sandwich
Requires: R-MatrixModels
Requires: R-farver
Requires: R-glue
Requires: R-labeling
Requires: R-R6
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-backports
Requires: R-jsonlite
Requires: R-bslib
Requires: R-fontawesome
Requires: R-jquerylib
Requires: R-tinytex
Requires: R-zoo
Requires: R-stringi
Requires: R-cachem
Requires: R-memoise
Requires: R-mime
Requires: R-sass
Requires: R-fs
Requires: R-rappdirs
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-mvtnorm
BuildRequires: R-rms
BuildRequires: R-kinship2
BuildRequires: R-quadprog
BuildRequires: R-knitr
BuildRequires: R-Hmisc
BuildRequires: R-quantreg
BuildRequires: R-ggplot2
BuildRequires: R-SparseM
BuildRequires: R-polspline
BuildRequires: R-multcomp
BuildRequires: R-htmlTable
BuildRequires: R-htmltools
BuildRequires: R-digest
BuildRequires: R-colorspace
BuildRequires: R-scales
BuildRequires: R-cli
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-lifecycle
BuildRequires: R-rlang
BuildRequires: R-S7
BuildRequires: R-vctrs
BuildRequires: R-withr
BuildRequires: R-gridExtra
BuildRequires: R-data.table
BuildRequires: R-viridis
BuildRequires: R-base64enc
BuildRequires: R-rmarkdown
BuildRequires: R-Formula
BuildRequires: R-stringr
BuildRequires: R-magrittr
BuildRequires: R-checkmate
BuildRequires: R-htmlwidgets
BuildRequires: R-rstudioapi
BuildRequires: R-fastmap
BuildRequires: R-evaluate
BuildRequires: R-highr
BuildRequires: R-xfun
BuildRequires: R-yaml
BuildRequires: R-TH.data
BuildRequires: R-sandwich
BuildRequires: R-MatrixModels
BuildRequires: R-farver
BuildRequires: R-glue
BuildRequires: R-labeling
BuildRequires: R-R6
BuildRequires: R-RColorBrewer
BuildRequires: R-viridisLite
BuildRequires: R-backports
BuildRequires: R-jsonlite
BuildRequires: R-bslib
BuildRequires: R-fontawesome
BuildRequires: R-jquerylib
BuildRequires: R-tinytex
BuildRequires: R-zoo
BuildRequires: R-stringi
BuildRequires: R-cachem
BuildRequires: R-memoise
BuildRequires: R-mime
BuildRequires: R-sass
BuildRequires: R-fs
BuildRequires: R-rappdirs
%description
Latent Class Analysis of phenotypic measurements in pedigrees and model
selection based on one of two methods: likelihood-based
cross-validation and Bayesian Information Criterion. Computation of
individual and triplet child-parents weights in a pedigree is performed
using an upward-downward algorithm. The model takes into account the
familial dependence defined by the pedigree structure by considering
that a class of a child depends on his parents classes via
triplet-transition probabilities of the classes. The package handles
the case where measurements are available on all subjects and the case
where measurements are available only on symptomatic (i.e. affected)
subjects. Distributions for discrete (or ordinal) and continuous data
are currently implemented. The package can deal with missing data.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%changelog
