File R-MSCA.spec of Package R-MSCA

# Automatically generated by CRAN2OBS
# 
# Spec file for package MSCA 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  MSCA 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.2.1 
Release:        0 
Summary:        Unsupervised Clustering of Multiple Censored Time-to-Event Endpoints 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         MSCA_1.2.1.tar.gz 
Requires:       R-base 
Requires:	R-Rcpp
Requires:	R-fastkmedoids
Requires:	R-RcppParallel
Requires:	R-data.table
Requires:	R-dplyr
Requires:	R-rlang
Requires:	R-RcppArmadillo
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-utf8
Requires:	R-pkgconfig
Requires:	R-withr
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-fastkmedoids
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-data.table
BuildRequires: 	R-dplyr
BuildRequires: 	R-rlang
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-utf8
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-withr
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-fastcluster
%description 
Provides basic tools and wrapper functions for computing clusters of 
instances described by multiple time-to-event censored endpoints. From 
long-format datasets, where one instance is described by one or more 
dated records, the main function, `make_state_matrices()`, creates 
state matrices. Based on these matrices, optimised procedures using the 
Jaccard distance between instances enable the construction of 
longitudinal typologies. The package is under active development, with 
additional tools for graphical representation of typologies planned. 
For methodological details, see our accompanying paper: `Delord M, 
Douiri A (2025) <doi:10.1186/s12874-025-02476-7>`. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog