File R-MorphoRegions.spec of Package R-MorphoRegions

# Automatically generated by CRAN2OBS
# 
# Spec file for package MorphoRegions 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  MorphoRegions 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.0 
Release:        0 
Summary:        Analysis of Regionalization Patterns in Serially Homologous Structures 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         MorphoRegions_0.1.0.tar.gz 
Requires:       R-base 
Requires:	R-RColorBrewer
Requires:	R-scales
Requires:	R-ggplot2
Requires:	R-chk
Requires:	R-pbapply
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-cli
Requires:	R-glue
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-tibble
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-viridisLite
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-pkgconfig
Requires:	R-utf8
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-scales
BuildRequires: 	R-ggplot2
BuildRequires: 	R-chk
BuildRequires: 	R-pbapply
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-cli
BuildRequires: 	R-glue
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-tibble
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-viridisLite
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-utf8
 
Suggests:	R-viridisLite
Suggests:	R-patchwork
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
Computes the optimal number of regions (or subdivisions) and their 
position in serial structures without a priori assumptions and to 
visualize the results. After reducing data dimensionality with the 
built-in function for data ordination, regions are fitted as segmented 
linear regressions along the serial structure. Every region boundary 
position and increasing number of regions are iteratively fitted and 
the best model (number of regions and boundary positions) is selected 
with an information criterion. This package expands on the previous 
'regions' package (Jones et al., Science 2018) with improved 
computation and more fitting and plotting options. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog