File R-MorphoRegions.spec of Package R-MorphoRegions
# Automatically generated by CRAN2OBS
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# Spec file for package MorphoRegions
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
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%global packname MorphoRegions
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 0.1.0
Release: 0
Summary: Analysis of Regionalization Patterns in Serially Homologous Structures
Group: Development/Libraries/Other
License: GPL (>= 2)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: MorphoRegions_0.1.0.tar.gz
Requires: R-base
Requires: R-RColorBrewer
Requires: R-scales
Requires: R-ggplot2
Requires: R-chk
Requires: R-pbapply
Requires: R-lifecycle
Requires: R-rlang
Requires: R-cli
Requires: R-glue
Requires: R-gtable
Requires: R-isoband
Requires: R-tibble
Requires: R-vctrs
Requires: R-withr
Requires: R-farver
Requires: R-labeling
Requires: R-R6
Requires: R-viridisLite
Requires: R-magrittr
Requires: R-pillar
Requires: R-pkgconfig
Requires: R-utf8
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-RColorBrewer
BuildRequires: R-scales
BuildRequires: R-ggplot2
BuildRequires: R-chk
BuildRequires: R-pbapply
BuildRequires: R-lifecycle
BuildRequires: R-rlang
BuildRequires: R-cli
BuildRequires: R-glue
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-tibble
BuildRequires: R-vctrs
BuildRequires: R-withr
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-R6
BuildRequires: R-viridisLite
BuildRequires: R-magrittr
BuildRequires: R-pillar
BuildRequires: R-pkgconfig
BuildRequires: R-utf8
Suggests: R-viridisLite
Suggests: R-patchwork
Suggests: R-knitr
Suggests: R-rmarkdown
%description
Computes the optimal number of regions (or subdivisions) and their
position in serial structures without a priori assumptions and to
visualize the results. After reducing data dimensionality with the
built-in function for data ordination, regions are fitted as segmented
linear regressions along the serial structure. Every region boundary
position and increasing number of regions are iteratively fitted and
the best model (number of regions and boundary positions) is selected
with an information criterion. This package expands on the previous
'regions' package (Jones et al., Science 2018) with improved
computation and more fitting and plotting options.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%changelog