File R-OmnibusFisher.spec of Package R-OmnibusFisher

# Automatically generated by CRAN2OBS
# 
# Spec file for package OmnibusFisher 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
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# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
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%global packname  OmnibusFisher 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0 
Release:        0 
Summary:        A Modified Fisher’s Method to Test Overall Gene-Level Effect 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         OmnibusFisher_1.0.tar.gz 
Requires:       R-base 
Requires:	R-CompQuadForm
Requires:	R-stringr
Requires:	R-survey
Requires:	R-cli
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-rlang
Requires:	R-stringi
Requires:	R-vctrs
Requires:	R-minqa
Requires:	R-numDeriv
Requires:	R-mitools
Requires:	R-Rcpp
Requires:	R-RcppArmadillo
Requires:	R-DBI
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-CompQuadForm
BuildRequires: 	R-stringr
BuildRequires: 	R-survey
BuildRequires: 	R-cli
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-rlang
BuildRequires: 	R-stringi
BuildRequires: 	R-vctrs
BuildRequires: 	R-minqa
BuildRequires: 	R-numDeriv
BuildRequires: 	R-mitools
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-DBI
 
%description 
The separate p-values of SNPs, RNA expressions and DNA methylations are 
calculated by KM regression. The correlation between different omics 
data are taken into account. This method can be applied to either 
samples with all three types of omics data or samples with two types. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog