File R-PhenotypeR.spec of Package R-PhenotypeR

# Automatically generated by CRAN2OBS
# 
# Spec file for package PhenotypeR 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  PhenotypeR 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.5 
Release:        0 
Summary:        Assess Study Cohorts Using a Common Data Model 
Group:          Development/Libraries/Other 
License:        Apache License (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         PhenotypeR_0.1.5.tar.gz 
Requires:       R-base 
Requires:	R-CodelistGenerator
Requires:	R-CohortCharacteristics
Requires:	R-CohortConstructor
Requires:	R-cli
Requires:	R-dplyr
Requires:	R-IncidencePrevalence
Requires:	R-omopgenerics
Requires:	R-OmopSketch
Requires:	R-magrittr
Requires:	R-purrr
Requires:	R-rlang
Requires:	R-vctrs
Requires:	R-DBI
Requires:	R-glue
Requires:	R-stringr
Requires:	R-stringi
Requires:	R-tidyr
Requires:	R-clock
Requires:	R-PatientProfiles
Requires:	R-jsonlite
Requires:	R-lifecycle
Requires:	R-CDMConnector
Requires:	R-snakecase
Requires:	R-checkmate
Requires:	R-dbplyr
Requires:	R-generics
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-withr
Requires:	R-readr
Requires:	R-backports
Requires:	R-tzdb
Requires:	R-cpp11
Requires:	R-blob
Requires:	R-utf8
Requires:	R-pkgconfig
Requires:	R-clipr
Requires:	R-crayon
Requires:	R-hms
Requires:	R-vroom
Requires:	R-bit64
Requires:	R-progress
Requires:	R-bit
Requires:	R-prettyunits
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-CodelistGenerator
BuildRequires: 	R-CohortCharacteristics
BuildRequires: 	R-CohortConstructor
BuildRequires: 	R-cli
BuildRequires: 	R-dplyr
BuildRequires: 	R-IncidencePrevalence
BuildRequires: 	R-omopgenerics
BuildRequires: 	R-OmopSketch
BuildRequires: 	R-magrittr
BuildRequires: 	R-purrr
BuildRequires: 	R-rlang
BuildRequires: 	R-vctrs
BuildRequires: 	R-DBI
BuildRequires: 	R-glue
BuildRequires: 	R-stringr
BuildRequires: 	R-stringi
BuildRequires: 	R-tidyr
BuildRequires: 	R-clock
BuildRequires: 	R-PatientProfiles
BuildRequires: 	R-jsonlite
BuildRequires: 	R-lifecycle
BuildRequires: 	R-CDMConnector
BuildRequires: 	R-snakecase
BuildRequires: 	R-checkmate
BuildRequires: 	R-dbplyr
BuildRequires: 	R-generics
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-withr
BuildRequires: 	R-readr
BuildRequires: 	R-backports
BuildRequires: 	R-tzdb
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-blob
BuildRequires: 	R-utf8
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-clipr
BuildRequires: 	R-crayon
BuildRequires: 	R-hms
BuildRequires: 	R-vroom
BuildRequires: 	R-bit64
BuildRequires: 	R-progress
BuildRequires: 	R-bit
BuildRequires: 	R-prettyunits
 
Suggests:	R-CDMConnector
Suggests:	R-duckdb
Suggests:	R-DBI
Suggests:	R-gt
Suggests:	R-omock
Suggests:	R-testthat
Suggests:	R-knitr
Suggests:	R-visOmopResults
Suggests:	R-glue
Suggests:	R-RPostgres
Suggests:	R-PatientProfiles
Suggests:	R-ggplot2
Suggests:	R-ggpubr
Suggests:	R-stringr
Suggests:	R-shiny
Suggests:	R-DiagrammeR
Suggests:	R-DiagrammeRsvg
Suggests:	R-reactable
Suggests:	R-reactablefmtr
Suggests:	R-rsvg
Suggests:	R-sortable
Suggests:	R-shinycssloaders
Suggests:	R-here
Suggests:	R-DT
Suggests:	R-bslib
Suggests:	R-shinyWidgets
Suggests:	R-plotly
Suggests:	R-tidyr
Suggests:	R-scales
Suggests:	R-usethis
Suggests:	R-rmarkdown
%description 
Phenotype study cohorts in data mapped to the Observational Medical 
Outcomes Partnership Common Data Model. Diagnostics are run at the 
database, code list, cohort, and population level to assess whether 
study cohorts are ready for research. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/example_cohorts
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/rmd
%{rlibdir}/%{packname}/shiny
 
%changelog