File R-ProfileGLMM.spec of Package R-ProfileGLMM

# Automatically generated by CRAN2OBS
# 
# Spec file for package ProfileGLMM 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  ProfileGLMM 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.0 
Release:        0 
Summary:        Bayesian Profile Regression using Generalised Linear Mixed Models 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         ProfileGLMM_1.1.0.tar.gz 
Requires:       R-base 
Requires:	R-Rcpp
Requires:	R-LaplacesDemon
Requires:	R-MCMCpack
Requires:	R-Spectrum
Requires:	R-mvtnorm
Requires:	R-RcppArmadillo
Requires:	R-RcppDist
Requires:	R-coda
Requires:	R-mcmc
Requires:	R-quantreg
Requires:	R-ggplot2
Requires:	R-ClusterR
Requires:	R-Rfast
Requires:	R-diptest
Requires:	R-gmp
Requires:	R-lifecycle
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-zigg
Requires:	R-RcppParallel
Requires:	R-glue
Requires:	R-cpp11
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-LaplacesDemon
BuildRequires: 	R-MCMCpack
BuildRequires: 	R-Spectrum
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-RcppDist
BuildRequires: 	R-coda
BuildRequires: 	R-mcmc
BuildRequires: 	R-quantreg
BuildRequires: 	R-ggplot2
BuildRequires: 	R-ClusterR
BuildRequires: 	R-Rfast
BuildRequires: 	R-diptest
BuildRequires: 	R-gmp
BuildRequires: 	R-lifecycle
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-SparseM
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-zigg
BuildRequires: 	R-RcppParallel-devel
BuildRequires: 	R-glue
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
Implements a Bayesian profile regression using a generalized linear 
mixed model as output model. The package allows for binary (probit 
mixed model) and continuous (linear mixed model) outcomes and both 
continuous and categorical clustering variables. The package utilizes 
'RcppArmadillo' and 'RcppDist' for high-performance statistical 
computing in C++. For more details see Amestoy & al. (2025) 
<doi:10.48550/arXiv.2510.08304>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
 
%changelog