File R-RNAseqNet.spec of Package R-RNAseqNet

# Automatically generated by CRAN2OBS
# 
# Spec file for package RNAseqNet 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  RNAseqNet 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.5 
Release:        0 
Summary:        Log-Linear Poisson Graphical Model with Hot-Deck Multiple Imputation 
Group:          Development/Libraries/Other 
License:        GPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         RNAseqNet_0.1.5.tar.gz 
Requires:       R-base 
Requires:	R-ggplot2
Requires:	R-igraph
Requires:	R-hot.deck
Requires:	R-PoiClaClu
Requires:	R-glmnet
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-withr
Requires:	R-foreach
Requires:	R-shape
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-data.table
Requires:	R-mice
Requires:	R-tidyr
Requires:	R-magrittr
Requires:	R-pkgconfig
Requires:	R-cpp11
Requires:	R-iterators
Requires:	R-glue
Requires:	R-broom
Requires:	R-dplyr
Requires:	R-mitml
Requires:	R-farver
Requires:	R-labeling
Requires:	R-R6
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-purrr
Requires:	R-stringr
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-backports
Requires:	R-generics
Requires:	R-pillar
Requires:	R-pan
Requires:	R-jomo
Requires:	R-haven
Requires:	R-stringi
Requires:	R-forcats
Requires:	R-hms
Requires:	R-readr
Requires:	R-lme4
Requires:	R-ordinal
Requires:	R-utf8
Requires:	R-Rdpack
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-ucminf
Requires:	R-numDeriv
Requires:	R-clipr
Requires:	R-crayon
Requires:	R-vroom
Requires:	R-tzdb
Requires:	R-rbibutils
Requires:	R-bit64
Requires:	R-progress
Requires:	R-bit
Requires:	R-prettyunits
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-ggplot2
BuildRequires: 	R-igraph
BuildRequires: 	R-hot.deck
BuildRequires: 	R-PoiClaClu
BuildRequires: 	R-glmnet
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-withr
BuildRequires: 	R-foreach
BuildRequires: 	R-shape
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-data.table
BuildRequires: 	R-mice
BuildRequires: 	R-tidyr
BuildRequires: 	R-magrittr
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-iterators
BuildRequires: 	R-glue
BuildRequires: 	R-broom
BuildRequires: 	R-dplyr
BuildRequires: 	R-mitml
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-R6
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-purrr
BuildRequires: 	R-stringr
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-backports
BuildRequires: 	R-generics
BuildRequires: 	R-pillar
BuildRequires: 	R-pan
BuildRequires: 	R-jomo
BuildRequires: 	R-haven
BuildRequires: 	R-stringi
BuildRequires: 	R-forcats
BuildRequires: 	R-hms
BuildRequires: 	R-readr
BuildRequires: 	R-lme4
BuildRequires: 	R-ordinal
BuildRequires: 	R-utf8
BuildRequires: 	R-Rdpack
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-ucminf
BuildRequires: 	R-numDeriv
BuildRequires: 	R-clipr
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BuildRequires: 	R-vroom
BuildRequires: 	R-tzdb
BuildRequires: 	R-rbibutils
BuildRequires: 	R-bit64
BuildRequires: 	R-progress
BuildRequires: 	R-bit
BuildRequires: 	R-prettyunits
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
Infer log-linear Poisson Graphical Model with an auxiliary data set. 
Hot-deck multiple imputation method is used to improve the reliability 
of the inference with an auxiliary dataset. Standard log-linear Poisson 
graphical model can also be used for the inference and the Stability 
Approach for Regularization Selection (StARS) is implemented to drive 
the selection of the regularization parameter. The method is fully 
described in <doi:10.1093/bioinformatics/btx819>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/misc
 
%changelog