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File R-RQdeltaCT.spec of Package R-RQdeltaCT

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%global packname  RQdeltaCT 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.3.3 
Release:        0 
Summary:        Relative Quantification of Gene Expression using Delta Ct Methods 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         RQdeltaCT_1.3.3.tar.gz 
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Suggests:	R-knitr
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Suggests:	R-testthat
%description 
The commonly used methods for relative quantification of gene 
expression levels obtained in real-time PCR (Polymerase Chain Reaction) 
experiments are the delta Ct methods, encompassing 2^-dCt and 2^-ddCt 
methods, originally proposed by Kenneth J. Livak and Thomas D. 
Schmittgen (2001) <doi:10.1006/meth.2001.1262>. The main idea is to 
normalise gene expression values using endogenous control gene, present 
gene expression levels in linear form by using the 2^-(value)^ 
transformation, and calculate differences in gene expression levels 
between groups of samples (or technical replicates of a single sample). 
The 'RQdeltaCT' package offers functions that cover both methods for 
comparison of either independent groups of samples or groups with 
paired samples, together with importing expression datasets, performing 
multi-step quality control of data, enabling numerous data 
visualisations, enrichment of the standard workflow with additional 
useful analyses (correlation analysis, Receiver Operating 
Characteristic analysis, logistic regression), and conveniently export 
obtained results in table and image formats. The package has been 
designed to be friendly to non-experts in R programming. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog
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