File R-SCORPIUS.spec of Package R-SCORPIUS
# Automatically generated by CRAN2OBS
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# Spec file for package SCORPIUS
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
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%global packname SCORPIUS
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.0.10
Release: 0
Summary: Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data
Group: Development/Libraries/Other
License: GPL-3
URL: http://cran.r-project.org/web/packages/%{packname}
Source: SCORPIUS_1.0.10.tar.gz
Requires: R-base
Requires: R-dplyr
Requires: R-dynutils
Requires: R-dynwrap
Requires: R-ggplot2
Requires: R-lmds
Requires: R-mclust
Requires: R-pbapply
Requires: R-pheatmap
Requires: R-princurve
Requires: R-purrr
Requires: R-ranger
Requires: R-RANN
Requires: R-RColorBrewer
Requires: R-reshape2
Requires: R-tidyr
Requires: R-TSP
Requires: R-cli
Requires: R-generics
Requires: R-glue
Requires: R-lifecycle
Requires: R-magrittr
Requires: R-pillar
Requires: R-R6
Requires: R-rlang
Requires: R-tibble
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-assertthat
Requires: R-crayon
Requires: R-desc
Requires: R-proxyC
Requires: R-Rcpp
Requires: R-remotes
Requires: R-stringr
Requires: R-babelwhale
Requires: R-dynparam
Requires: R-igraph
Requires: R-processx
Requires: R-readr
Requires: R-yaml
Requires: R-gtable
Requires: R-isoband
Requires: R-S7
Requires: R-scales
Requires: R-withr
Requires: R-irlba
Requires: R-RcppEigen
Requires: R-plyr
Requires: R-cpp11
Requires: R-foreach
Requires: R-fs
Requires: R-digest
Requires: R-carrier
Requires: R-iterators
Requires: R-pkgconfig
Requires: R-utf8
Requires: R-ps
Requires: R-RcppArmadillo
Requires: R-clipr
Requires: R-hms
Requires: R-vroom
Requires: R-tzdb
Requires: R-farver
Requires: R-labeling
Requires: R-viridisLite
Requires: R-stringi
Requires: R-lobstr
Requires: R-bit64
Requires: R-progress
Requires: R-bit
Requires: R-prettyunits
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-dplyr
BuildRequires: R-dynutils
BuildRequires: R-dynwrap
BuildRequires: R-ggplot2
BuildRequires: R-lmds
BuildRequires: R-mclust
BuildRequires: R-pbapply
BuildRequires: R-pheatmap
BuildRequires: R-princurve
BuildRequires: R-purrr
BuildRequires: R-ranger
BuildRequires: R-RANN
BuildRequires: R-RColorBrewer
BuildRequires: R-reshape2
BuildRequires: R-tidyr
BuildRequires: R-TSP
BuildRequires: R-cli
BuildRequires: R-generics
BuildRequires: R-glue
BuildRequires: R-lifecycle
BuildRequires: R-magrittr
BuildRequires: R-pillar
BuildRequires: R-R6
BuildRequires: R-rlang
BuildRequires: R-tibble
BuildRequires: R-tidyselect
BuildRequires: R-vctrs
BuildRequires: R-assertthat
BuildRequires: R-crayon
BuildRequires: R-desc
BuildRequires: R-proxyC
BuildRequires: R-Rcpp-devel
BuildRequires: R-remotes
BuildRequires: R-stringr
BuildRequires: R-babelwhale
BuildRequires: R-dynparam
BuildRequires: R-igraph
BuildRequires: R-processx
BuildRequires: R-readr
BuildRequires: R-yaml
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-S7
BuildRequires: R-scales
BuildRequires: R-withr
BuildRequires: R-irlba
BuildRequires: R-RcppEigen-devel
BuildRequires: R-plyr
BuildRequires: R-cpp11-devel
BuildRequires: R-foreach
BuildRequires: R-fs
BuildRequires: R-digest
BuildRequires: R-carrier
BuildRequires: R-iterators
BuildRequires: R-pkgconfig
BuildRequires: R-utf8
BuildRequires: R-ps
BuildRequires: R-RcppArmadillo-devel
BuildRequires: R-clipr
BuildRequires: R-hms
BuildRequires: R-vroom
BuildRequires: R-tzdb
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-viridisLite
BuildRequires: R-stringi
BuildRequires: R-lobstr
BuildRequires: R-bit64
BuildRequires: R-progress
BuildRequires: R-bit
BuildRequires: R-prettyunits
Suggests: R-anndata
Suggests: R-covr
Suggests: R-knitr
Suggests: R-reticulate
Suggests: R-rmarkdown
Suggests: R-Seurat
Suggests: R-SingleCellExperiment
Suggests: R-testthat
%description
An accurate and easy tool for performing linear trajectory inference on
single cells using single-cell RNA sequencing data. In addition,
'SCORPIUS' provides functions for discovering the most important genes
with respect to the reconstructed trajectory, as well as nice
visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/dynwrap
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%changelog
