File R-Semblance.spec of Package R-Semblance

# Automatically generated by CRAN2OBS
# 
# Spec file for package Semblance 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  Semblance 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.1.0 
Release:        0 
Summary:        A Data-Driven Similarity Kernel on Probability Spaces 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         Semblance_1.1.0.tar.gz 
Requires:       R-base 
Requires:	R-fields
Requires:	R-PerformanceAnalytics
Requires:	R-DescTools
Requires:	R-msos
Requires:	R-mvtnorm
Requires:	R-expm
Requires:	R-Rcpp
Requires:	R-rstudioapi
Requires:	R-Exact
Requires:	R-gld
Requires:	R-data.table
Requires:	R-readxl
Requires:	R-readr
Requires:	R-haven
Requires:	R-httr
Requires:	R-withr
Requires:	R-cli
Requires:	R-fs
Requires:	R-spam
Requires:	R-viridisLite
Requires:	R-RColorBrewer
Requires:	R-maps
Requires:	R-mclust
Requires:	R-tree
Requires:	R-xts
Requires:	R-quadprog
Requires:	R-zoo
Requires:	R-rootSolve
Requires:	R-e1071
Requires:	R-lmom
Requires:	R-forcats
Requires:	R-hms
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-cpp11
Requires:	R-curl
Requires:	R-jsonlite
Requires:	R-mime
Requires:	R-openssl
Requires:	R-R6
Requires:	R-clipr
Requires:	R-crayon
Requires:	R-vroom
Requires:	R-tzdb
Requires:	R-cellranger
Requires:	R-progress
Requires:	R-dotCall64
Requires:	R-rematch
Requires:	R-proxy
Requires:	R-glue
Requires:	R-magrittr
Requires:	R-pkgconfig
Requires:	R-askpass
Requires:	R-prettyunits
Requires:	R-pillar
Requires:	R-bit64
Requires:	R-sys
Requires:	R-bit
Requires:	R-utf8
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-fields
BuildRequires: 	R-PerformanceAnalytics
BuildRequires: 	R-DescTools
BuildRequires: 	R-msos
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-expm
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-rstudioapi
BuildRequires: 	R-Exact
BuildRequires: 	R-gld
BuildRequires: 	R-data.table
BuildRequires: 	R-readxl
BuildRequires: 	R-readr
BuildRequires: 	R-haven
BuildRequires: 	R-httr
BuildRequires: 	R-withr
BuildRequires: 	R-cli
BuildRequires: 	R-fs
BuildRequires: 	R-spam
BuildRequires: 	R-viridisLite
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-maps
BuildRequires: 	R-mclust
BuildRequires: 	R-tree
BuildRequires: 	R-xts
BuildRequires: 	R-quadprog
BuildRequires: 	R-zoo
BuildRequires: 	R-rootSolve
BuildRequires: 	R-e1071
BuildRequires: 	R-lmom
BuildRequires: 	R-forcats
BuildRequires: 	R-hms
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-curl
BuildRequires: 	R-jsonlite
BuildRequires: 	R-mime
BuildRequires: 	R-openssl
BuildRequires: 	R-R6
BuildRequires: 	R-clipr
BuildRequires: 	R-crayon
BuildRequires: 	R-vroom
BuildRequires: 	R-tzdb
BuildRequires: 	R-cellranger
BuildRequires: 	R-progress
BuildRequires: 	R-dotCall64
BuildRequires: 	R-rematch
BuildRequires: 	R-proxy
BuildRequires: 	R-glue
BuildRequires: 	R-magrittr
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-askpass
BuildRequires: 	R-prettyunits
BuildRequires: 	R-pillar
BuildRequires: 	R-bit64
BuildRequires: 	R-sys
BuildRequires: 	R-bit
BuildRequires: 	R-utf8
 
Suggests:	R-kernlab
%description 
We present a rank-based Mercer kernel to compute a pair-wise similarity 
metric corresponding to informative representation of data. We tailor 
the development of a kernel to encode our prior knowledge about the 
data distribution over a probability space. The philosophical concept 
behind our construction is that objects whose feature values fall on 
the extreme of that feature’s probability mass distribution are more 
similar to each other, than objects whose feature values lie closer to 
the mean. Semblance emphasizes features whose values lie far away from 
the mean of their probability distribution. The kernel relies on 
properties empirically determined from the data and does not assume an 
underlying distribution. The use of feature ranks on a probability 
space ensures that Semblance is computational efficacious, robust to 
outliers, and statistically stable, thus making it widely applicable 
algorithm for pattern analysis. The output from the kernel is a square, 
symmetric matrix that gives proximity values between pairs of 
observations. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog 
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