File R-altmeta.spec of Package R-altmeta

# Automatically generated by CRAN2OBS
# 
# Spec file for package altmeta 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  altmeta 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        4.3 
Release:        0 
Summary:        Alternative Meta-Analysis Methods 
Group:          Development/Libraries/Other 
License:        GPL (>= 2) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         altmeta_4.3.tar.gz 
Requires:       R-base 
Requires:	R-rjags
Requires:	R-coda
Requires:	R-lme4
Requires:	R-metafor
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-metadat
Requires:	R-numDeriv
Requires:	R-mathjaxr
Requires:	R-pbapply
Requires:	R-digest
Requires:	R-Rdpack
Requires:	R-rbibutils
Requires:	jags
Requires:	jags-devel
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-rjags
BuildRequires: 	R-coda
BuildRequires: 	R-lme4
BuildRequires: 	R-metafor
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-metadat
BuildRequires: 	R-numDeriv
BuildRequires: 	R-mathjaxr
BuildRequires: 	R-pbapply
BuildRequires: 	R-digest
BuildRequires: 	R-Rdpack
BuildRequires: 	R-rbibutils
BuildRequires: 	jags
BuildRequires: 	jags-devel
 
%description 
Provides alternative statistical methods for meta-analysis, including: 
- bivariate generalized linear mixed models for synthesizing odds 
ratios, relative risks, and risk differences (Chu et al., 2012 
<doi:10.1177/0962280210393712>) - tests and measures for between-study 
heterogeneity (Lin et al., 2017 <doi:10.1111/biom.12543>; Wang et al., 
2022 <doi:10.1002/sim.9261>); - measures, tests, and visualization 
tools for publication bias or small-study effects (Lin and Chu, 2018 
<doi:10.1111/biom.12817>; Lin, 2019 <doi:10.1002/jrsm.1340>; Lin, 2020 
<doi:10.1177/0962280220910172>; Shi et al., 2020 
<doi:10.1002/jrsm.1415>); - meta-analysis of combining standardized 
mean differences and odds ratios (Jing et al., 2023 
<doi:10.1080/10543406.2022.2105345>); - meta-analysis of diagnostic 
tests for synthesizing sensitivities, specificities, etc. (Reitsma et 
al., 2005 <doi:10.1016/j.jclinepi.2005.02.022>; Chu and Cole, 2006 
<doi:10.1016/j.jclinepi.2006.06.011>); - meta-analysis methods for 
synthesizing proportions (Lin and Chu, 2020 
<doi:10.1097/ede.0000000000001232>); - models for multivariate 
meta-analysis, measures of inconsistency degrees of freedom in Bayesian 
network meta-analysis, and predictive P-score (Lin and Chu, 2018 
<doi:10.1002/jrsm.1293>; Lin, 2020 <doi:10.1080/10543406.2020.1852247>; 
Rosenberger et al., 2021 <doi:10.1186/s12874-021-01397-5>). 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog