File R-beadplexr.spec of Package R-beadplexr

# Automatically generated by CRAN2OBS
# 
# Spec file for package beadplexr 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  beadplexr 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.5.0 
Release:        0 
Summary:        Analysis of Multiplex Cytometric Bead Assays 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         beadplexr_0.5.0.tar.gz 
Requires:       R-base 
Requires:	R-dplyr
Requires:	R-drc
Requires:	R-fpc
Requires:	R-ggplot2
Requires:	R-mclust
Requires:	R-purrr
Requires:	R-tibble
Requires:	R-tidyr
Requires:	R-yaml
Requires:	R-rlang
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-car
Requires:	R-gtools
Requires:	R-multcomp
Requires:	R-plotrix
Requires:	R-scales
Requires:	R-flexmix
Requires:	R-prabclus
Requires:	R-diptest
Requires:	R-robustbase
Requires:	R-kernlab
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-withr
Requires:	R-pkgconfig
Requires:	R-stringr
Requires:	R-cpp11
Requires:	R-carData
Requires:	R-abind
Requires:	R-Formula
Requires:	R-pbkrtest
Requires:	R-quantreg
Requires:	R-lme4
Requires:	R-modeltools
Requires:	R-mvtnorm
Requires:	R-TH.data
Requires:	R-sandwich
Requires:	R-utf8
Requires:	R-DEoptimR
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-stringi
Requires:	R-minqa
Requires:	R-nloptr
Requires:	R-reformulas
Requires:	R-Rcpp
Requires:	R-RcppEigen
Requires:	R-broom
Requires:	R-numDeriv
Requires:	R-doBy
Requires:	R-SparseM
Requires:	R-MatrixModels
Requires:	R-zoo
Requires:	R-backports
Requires:	R-cowplot
Requires:	R-Deriv
Requires:	R-modelr
Requires:	R-microbenchmark
Requires:	R-Rdpack
Requires:	R-rbibutils
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-dplyr
BuildRequires: 	R-drc
BuildRequires: 	R-fpc
BuildRequires: 	R-ggplot2
BuildRequires: 	R-mclust
BuildRequires: 	R-purrr
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyr
BuildRequires: 	R-yaml
BuildRequires: 	R-rlang
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-car
BuildRequires: 	R-gtools
BuildRequires: 	R-multcomp
BuildRequires: 	R-plotrix
BuildRequires: 	R-scales
BuildRequires: 	R-flexmix
BuildRequires: 	R-prabclus
BuildRequires: 	R-diptest
BuildRequires: 	R-robustbase
BuildRequires: 	R-kernlab
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-withr
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-stringr
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-carData
BuildRequires: 	R-abind
BuildRequires: 	R-Formula
BuildRequires: 	R-pbkrtest
BuildRequires: 	R-quantreg
BuildRequires: 	R-lme4
BuildRequires: 	R-modeltools
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-TH.data
BuildRequires: 	R-sandwich
BuildRequires: 	R-utf8
BuildRequires: 	R-DEoptimR
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-stringi
BuildRequires: 	R-minqa
BuildRequires: 	R-nloptr
BuildRequires: 	R-reformulas
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-broom
BuildRequires: 	R-numDeriv
BuildRequires: 	R-doBy
BuildRequires: 	R-SparseM
BuildRequires: 	R-MatrixModels
BuildRequires: 	R-zoo
BuildRequires: 	R-backports
BuildRequires: 	R-cowplot
BuildRequires: 	R-Deriv
BuildRequires: 	R-modelr
BuildRequires: 	R-microbenchmark
BuildRequires: 	R-Rdpack
BuildRequires: 	R-rbibutils
 
Suggests:	R-spelling
Suggests:	R-gridExtra
Suggests:	R-hexbin
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-stringr
Suggests:	R-testthat
%description 
Reproducible and automated analysis of multiplex bead assays such as 
CBA (Morgan et al. 2004; <doi: 10.1016/j.clim.2003.11.017>), LEGENDplex 
(Yu et al. 2015; <doi: 10.1084/jem.20142318>), and MACSPlex (Miltenyi 
Biotec 2014; Application note: Data acquisition and analysis without 
the MACSQuant analyzer; 
<https://www.miltenyibiotec.com/upload/assets/IM0021608.PDF>). The 
package provides functions for streamlined reading of fcs files, and 
identification of bead clusters and analyte expression. The package 
eases the calculation of standard curves and the subsequent calculation 
of the analyte concentration. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/resources
%{rlibdir}/%{packname}/testdata
 
%changelog