File R-bioseq.spec of Package R-bioseq

# Automatically generated by CRAN2OBS
# 
# Spec file for package bioseq 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  bioseq 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.4 
Release:        0 
Summary:        A Toolbox for Manipulating Biological Sequences 
Group:          Development/Libraries/Other 
License:        GPL-3 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         bioseq_0.1.4.tar.gz 
Requires:       R-base 
Requires:	R-vctrs
Requires:	R-tibble
Requires:	R-ape
Requires:	R-crayon
Requires:	R-dplyr
Requires:	R-pillar
Requires:	R-stringi
Requires:	R-stringr
Requires:	R-stringdist
Requires:	R-readr
Requires:	R-rlang
Requires:	R-Rcpp
Requires:	R-digest
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-R6
Requires:	R-tidyselect
Requires:	R-utf8
Requires:	R-clipr
Requires:	R-hms
Requires:	R-vroom
Requires:	R-cpp11
Requires:	R-tzdb
Requires:	R-pkgconfig
Requires:	R-withr
Requires:	R-bit64
Requires:	R-progress
Requires:	R-bit
Requires:	R-prettyunits
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-vctrs
BuildRequires: 	R-tibble
BuildRequires: 	R-ape
BuildRequires: 	R-crayon
BuildRequires: 	R-dplyr
BuildRequires: 	R-pillar
BuildRequires: 	R-stringi
BuildRequires: 	R-stringr
BuildRequires: 	R-stringdist
BuildRequires: 	R-readr
BuildRequires: 	R-rlang
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-digest
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-R6
BuildRequires: 	R-tidyselect
BuildRequires: 	R-utf8
BuildRequires: 	R-clipr
BuildRequires: 	R-hms
BuildRequires: 	R-vroom
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-tzdb
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-withr
BuildRequires: 	R-bit64
BuildRequires: 	R-progress
BuildRequires: 	R-bit
BuildRequires: 	R-prettyunits
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-testthat
Suggests:	R-covr
%description 
Classes and functions to work with biological sequences (DNA, RNA and 
amino acid sequences). Implements S3 infrastructure to work with 
biological sequences as described in Keck (2020) 
<doi:10.1111/2041-210X.13490>. Provides a collection of functions to 
perform biological conversion among classes (transcription, 
translation) and basic operations on sequences (detection, selection 
and replacement based on positions or patterns). The package also 
provides functions to import and export sequences from and to other 
package formats. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog