File R-chicane.spec of Package R-chicane

# Automatically generated by CRAN2OBS
# 
# Spec file for package chicane 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2024 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  chicane 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.8 
Release:        0 
Summary:        Capture Hi-C Analysis Engine 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         chicane_0.1.8.tar.gz 
Requires:       R-base 
Requires:	R-gamlss.tr
Requires:	R-gamlss
Requires:	R-data.table
Requires:	R-foreach
Requires:	R-doParallel
Requires:	R-iterators
Requires:	R-bedr
Requires:	R-knitr
Requires:	R-rmarkdown
Requires:	R-testthat
Requires:	R-VennDiagram
Requires:	R-R.utils
Requires:	R-yaml
Requires:	R-gamlss.data
Requires:	R-gamlss.dist
Requires:	R-evaluate
Requires:	R-highr
Requires:	R-xfun
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-htmltools
Requires:	R-jquerylib
Requires:	R-jsonlite
Requires:	R-tinytex
Requires:	R-base64enc
Requires:	R-cachem
Requires:	R-fastmap
Requires:	R-lifecycle
Requires:	R-memoise
Requires:	R-mime
Requires:	R-rlang
Requires:	R-sass
Requires:	R-digest
Requires:	R-R.oo
Requires:	R-R.methodsS3
Requires:	R-brio
Requires:	R-callr
Requires:	R-cli
Requires:	R-desc
Requires:	R-magrittr
Requires:	R-pkgload
Requires:	R-praise
Requires:	R-processx
Requires:	R-ps
Requires:	R-R6
Requires:	R-waldo
Requires:	R-withr
Requires:	R-futile.logger
Requires:	R-lambda.r
Requires:	R-futile.options
Requires:	R-glue
Requires:	R-fs
Requires:	R-pkgbuild
Requires:	R-rprojroot
Requires:	R-rappdirs
Requires:	R-diffobj
Requires:	R-crayon
Requires:	R-formatR
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-gamlss.tr
BuildRequires: 	R-gamlss
BuildRequires: 	R-data.table
BuildRequires: 	R-foreach
BuildRequires: 	R-doParallel
BuildRequires: 	R-iterators
BuildRequires: 	R-bedr
BuildRequires: 	R-knitr
BuildRequires: 	R-rmarkdown
BuildRequires: 	R-testthat
BuildRequires: 	R-VennDiagram
BuildRequires: 	R-R.utils
BuildRequires: 	R-yaml
BuildRequires: 	R-gamlss.data
BuildRequires: 	R-gamlss.dist
BuildRequires: 	R-evaluate
BuildRequires: 	R-highr
BuildRequires: 	R-xfun
BuildRequires: 	R-bslib
BuildRequires: 	R-fontawesome
BuildRequires: 	R-htmltools
BuildRequires: 	R-jquerylib
BuildRequires: 	R-jsonlite
BuildRequires: 	R-tinytex
BuildRequires: 	R-base64enc
BuildRequires: 	R-cachem
BuildRequires: 	R-fastmap
BuildRequires: 	R-lifecycle
BuildRequires: 	R-memoise
BuildRequires: 	R-mime
BuildRequires: 	R-rlang
BuildRequires: 	R-sass
BuildRequires: 	R-digest
BuildRequires: 	R-R.oo
BuildRequires: 	R-R.methodsS3
BuildRequires: 	R-brio
BuildRequires: 	R-callr
BuildRequires: 	R-cli
BuildRequires: 	R-desc
BuildRequires: 	R-magrittr
BuildRequires: 	R-pkgload
BuildRequires: 	R-praise
BuildRequires: 	R-processx
BuildRequires: 	R-ps
BuildRequires: 	R-R6
BuildRequires: 	R-waldo
BuildRequires: 	R-withr
BuildRequires: 	R-futile.logger
BuildRequires: 	R-lambda.r
BuildRequires: 	R-futile.options
BuildRequires: 	R-glue
BuildRequires: 	R-fs
BuildRequires: 	R-pkgbuild
BuildRequires: 	R-rprojroot
BuildRequires: 	R-rappdirs
BuildRequires: 	R-diffobj
BuildRequires: 	R-crayon
BuildRequires: 	R-formatR
 
Suggests:	R-testthat
Suggests:	R-GenomicInteractions
Suggests:	R-GenomicRanges
Suggests:	R-Gviz
Suggests:	R-countreg
%description 
Toolkit for processing and calling interactions in capture Hi-C data. 
Converts BAM files into counts of reads linking restriction fragments, 
and identifies pairs of fragments that interact more than expected by 
chance. Significant interactions are identified by comparing the 
observed read count to the expected background rate from a count 
regression model. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/bin
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog