File R-clockSim.spec of Package R-clockSim

# Automatically generated by CRAN2OBS
# 
# Spec file for package clockSim 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
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# published by the Open Source Initiative. 
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%global packname  clockSim 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.2 
Release:        0 
Summary:        Streamlined Simulation of Circadian Gene Networks 
Group:          Development/Libraries/Other 
License:        GPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         clockSim_0.1.2.tar.gz 
Requires:       R-base 
Requires:	R-bench
Requires:	R-dde
Requires:	R-dplyr
Requires:	R-ggplot2
Requires:	R-lomb
Requires:	R-matrixStats
Requires:	R-odin
Requires:	R-rlang
Requires:	R-tidyr
Requires:	R-glue
Requires:	R-pillar
Requires:	R-profmem
Requires:	R-tibble
Requires:	R-ring
Requires:	R-cli
Requires:	R-generics
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-R6
Requires:	R-tidyselect
Requires:	R-vctrs
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Requires:	R-isoband
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Requires:	R-scales
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Requires:	R-pracma
Requires:	R-knitr
Requires:	R-cinterpolate
Requires:	R-deSolve
Requires:	R-digest
Requires:	R-jsonlite
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Requires:	R-stringr
Requires:	R-cpp11
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Requires:	R-xfun
Requires:	R-yaml
Requires:	R-utf8
Requires:	R-httr
Requires:	R-viridisLite
Requires:	R-base64enc
Requires:	R-htmltools
Requires:	R-htmlwidgets
Requires:	R-RColorBrewer
Requires:	R-lazyeval
Requires:	R-crosstalk
Requires:	R-data.table
Requires:	R-promises
Requires:	R-farver
Requires:	R-labeling
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-fastmap
Requires:	R-rmarkdown
Requires:	R-curl
Requires:	R-mime
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Requires:	R-later
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Requires:	R-Rcpp
Requires:	R-askpass
Requires:	R-bslib
Requires:	R-fontawesome
Requires:	R-jquerylib
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Requires:	R-sys
Requires:	R-cachem
Requires:	R-memoise
Requires:	R-sass
Requires:	R-fs
Requires:	R-rappdirs
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
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BuildRequires: 	R-withr
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BuildRequires: 	R-rappdirs
BuildRequires:  gcc gcc-c++ gcc-fortran
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
%description 
A user-friendly workflow for simulating circadian clock gene networks. 
Despite decades of advances in modeling circadian clock dynamics, the 
lack of accessible tools for reproducible simulation workflows hinders 
the integration of computational modeling with experimental studies. 
'clockSim' addresses this gap by providing models and helper functions 
with step-by-step vignettes. This package opens up system-level 
exploration of the circadian clock to wet-lab experimentalists, and 
future development will include additional clock architectures and 
other gene circuit models. Currently implemented models are based on 
Leloup and Goldbeter (1998) <doi:10.1177/074873098128999934>. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%{rlibdir}/%{packname}/odin
 
%changelog