File R-copre.spec of Package R-copre
# Automatically generated by CRAN2OBS
#
# Spec file for package copre
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
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%global packname copre
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 0.2.2
Release: 0
Summary: Tools for Nonparametric Martingale Posterior Sampling
Group: Development/Libraries/Other
License: GPL (>= 2)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: copre_0.2.2.tar.gz
Requires: R-base
Requires: R-Rcpp
Requires: R-pracma
Requires: R-abind
Requires: R-dirichletprocess
Requires: R-RcppArmadillo
Requires: R-BH
Requires: R-gtools
Requires: R-ggplot2
Requires: R-mvtnorm
Requires: R-cli
Requires: R-gtable
Requires: R-isoband
Requires: R-lifecycle
Requires: R-rlang
Requires: R-S7
Requires: R-scales
Requires: R-vctrs
Requires: R-withr
Requires: R-glue
Requires: R-cpp11
Requires: R-farver
Requires: R-labeling
Requires: R-R6
Requires: R-RColorBrewer
Requires: R-viridisLite
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-Rcpp-devel
BuildRequires: R-pracma
BuildRequires: R-abind
BuildRequires: R-dirichletprocess
BuildRequires: R-RcppArmadillo-devel
BuildRequires: R-BH-devel
BuildRequires: R-gtools
BuildRequires: R-ggplot2
BuildRequires: R-mvtnorm
BuildRequires: R-cli
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-lifecycle
BuildRequires: R-rlang
BuildRequires: R-S7
BuildRequires: R-scales
BuildRequires: R-vctrs
BuildRequires: R-withr
BuildRequires: R-glue
BuildRequires: R-cpp11-devel
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-R6
BuildRequires: R-RColorBrewer
BuildRequires: R-viridisLite
BuildRequires: gcc gcc-c++ gcc-fortran
Suggests: R-ggplot2
%description
Performs Bayesian nonparametric density estimation using Martingale
posterior distributions including the Copula Resampling (CopRe)
algorithm. Also included are a Gibbs sampler for the marginal
Gibbs-type mixture model and an extension to include full uncertainty
quantification via a predictive sequence resampling (SeqRe) algorithm.
The CopRe and SeqRe samplers generate random nonparametric
distributions as output, leading to complete nonparametric inference on
posterior summaries. Routines for calculating arbitrary functionals
from the sampled distributions are included as well as an important
algorithm for finding the number and location of modes, which can then
be used to estimate the clusters in the data using, for example,
k-means. Implements work developed in Moya B., Walker S. G. (2022).
<doi:10.48550/arxiv.2206.08418>, Fong, E., Holmes, C., Walker, S. G.
(2021) <doi:10.48550/arxiv.2103.15671>, and Escobar M. D., West, M.
(1995) <doi:10.1080/01621459.1995.10476550>.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/libs
%changelog
