File R-debiasedTrialEmulation.spec of Package R-debiasedTrialEmulation
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# Spec file for package debiasedTrialEmulation
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%global packname debiasedTrialEmulation
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 0.1.0
Release: 0
Summary: Pipeline for Debiased Target Trial Emulation
Group: Development/Libraries/Other
License: GPL (>= 2)
URL: http://cran.r-project.org/web/packages/%{packname}
Source: debiasedTrialEmulation_0.1.0.tar.gz
Requires: R-base
Requires: R-dplyr
Requires: R-janitor
Requires: R-cobalt
Requires: R-MatchIt
Requires: R-geex
Requires: R-glmnet
Requires: R-ggplot2
Requires: R-ParallelLogger
Requires: R-EmpiricalCalibration
Requires: R-purrr
Requires: R-gtable
Requires: R-gridExtra
Requires: R-chk
Requires: R-rlang
Requires: R-cli
Requires: R-generics
Requires: R-glue
Requires: R-lifecycle
Requires: R-magrittr
Requires: R-pillar
Requires: R-R6
Requires: R-tibble
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-Rcpp
Requires: R-rootSolve
Requires: R-numDeriv
Requires: R-lme4
Requires: R-isoband
Requires: R-S7
Requires: R-scales
Requires: R-withr
Requires: R-foreach
Requires: R-shape
Requires: R-RcppEigen
Requires: R-hms
Requires: R-lubridate
Requires: R-stringi
Requires: R-stringr
Requires: R-snakecase
Requires: R-tidyr
Requires: R-backports
Requires: R-RcppProgress
Requires: R-snow
Requires: R-xml2
Requires: R-jsonlite
Requires: R-rstudioapi
Requires: R-memuse
Requires: R-iterators
Requires: R-pkgconfig
Requires: R-cpp11
Requires: R-Rdpack
Requires: R-minqa
Requires: R-nloptr
Requires: R-reformulas
Requires: R-timechange
Requires: R-utf8
Requires: R-farver
Requires: R-labeling
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-rbibutils
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
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BuildRequires: R-cobalt
BuildRequires: R-MatchIt
BuildRequires: R-geex
BuildRequires: R-glmnet
BuildRequires: R-ggplot2
BuildRequires: R-ParallelLogger
BuildRequires: R-EmpiricalCalibration
BuildRequires: R-purrr
BuildRequires: R-gtable
BuildRequires: R-gridExtra
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BuildRequires: R-numDeriv
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BuildRequires: R-lubridate
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BuildRequires: R-iterators
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%description
Supports propensity score-based methods—including matching,
stratification, and weighting—for estimating causal treatment effects.
It also implements calibration using negative control outcomes to
enhance robustness. 'debiasedTrialEmulation' facilitates effect
estimation for both binary and time-to-event outcomes, supporting risk
ratio (RR), odds ratio (OR), and hazard ratio (HR) as effect measures.
It integrates statistical modeling and visualization tools to assess
covariate balance, equipoise, and bias calibration. Additional
methods—including approaches to address immortal time bias, information
bias, selection bias, and informative censoring—are under development.
Users interested in these extended features are encouraged to contact
the package authors.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%changelog
