File R-depower.spec of Package R-depower
# Automatically generated by CRAN2OBS
#
# Spec file for package depower
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany.
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%global packname depower
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 2025.10.21
Release: 0
Summary: Power Analysis for Differential Expression Studies
Group: Development/Libraries/Other
License: MIT + file LICENSE
URL: http://cran.r-project.org/web/packages/%{packname}
Source: depower_2025.10.21.tar.gz
Requires: R-base
Requires: R-Rdpack
Requires: R-mvnfast
Requires: R-glmmTMB
Requires: R-dplyr
Requires: R-multidplyr
Requires: R-ggplot2
Requires: R-scales
Requires: R-cli
Requires: R-generics
Requires: R-glue
Requires: R-lifecycle
Requires: R-magrittr
Requires: R-pillar
Requires: R-R6
Requires: R-rlang
Requires: R-tibble
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-gtable
Requires: R-isoband
Requires: R-S7
Requires: R-withr
Requires: R-TMB
Requires: R-lme4
Requires: R-numDeriv
Requires: R-reformulas
Requires: R-pbkrtest
Requires: R-sandwich
Requires: R-RcppEigen
Requires: R-callr
Requires: R-crayon
Requires: R-qs
Requires: R-Rcpp
Requires: R-RcppArmadillo
Requires: R-BH
Requires: R-rbibutils
Requires: R-farver
Requires: R-labeling
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-processx
Requires: R-minqa
Requires: R-nloptr
Requires: R-broom
Requires: R-doBy
Requires: R-utf8
Requires: R-RApiSerialize
Requires: R-stringfish
Requires: R-zoo
Requires: R-pkgconfig
Requires: R-backports
Requires: R-purrr
Requires: R-stringr
Requires: R-tidyr
Requires: R-cowplot
Requires: R-Deriv
Requires: R-modelr
Requires: R-microbenchmark
Requires: R-ps
Requires: R-RcppParallel
Requires: R-stringi
Requires: R-cpp11
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-Rdpack
BuildRequires: R-mvnfast
BuildRequires: R-glmmTMB
BuildRequires: R-dplyr
BuildRequires: R-multidplyr
BuildRequires: R-ggplot2
BuildRequires: R-scales
BuildRequires: R-cli
BuildRequires: R-generics
BuildRequires: R-glue
BuildRequires: R-lifecycle
BuildRequires: R-magrittr
BuildRequires: R-pillar
BuildRequires: R-R6
BuildRequires: R-rlang
BuildRequires: R-tibble
BuildRequires: R-tidyselect
BuildRequires: R-vctrs
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-S7
BuildRequires: R-withr
BuildRequires: R-TMB-devel
BuildRequires: R-lme4
BuildRequires: R-numDeriv
BuildRequires: R-reformulas
BuildRequires: R-pbkrtest
BuildRequires: R-sandwich
BuildRequires: R-RcppEigen-devel
BuildRequires: R-callr
BuildRequires: R-crayon
BuildRequires: R-qs
BuildRequires: R-Rcpp-devel
BuildRequires: R-RcppArmadillo-devel
BuildRequires: R-BH-devel
BuildRequires: R-rbibutils
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-RColorBrewer
BuildRequires: R-viridisLite
BuildRequires: R-processx
BuildRequires: R-minqa
BuildRequires: R-nloptr
BuildRequires: R-broom
BuildRequires: R-doBy
BuildRequires: R-utf8
BuildRequires: R-RApiSerialize
BuildRequires: R-stringfish-devel
BuildRequires: R-zoo
BuildRequires: R-pkgconfig
BuildRequires: R-backports
BuildRequires: R-purrr
BuildRequires: R-stringr
BuildRequires: R-tidyr
BuildRequires: R-cowplot
BuildRequires: R-Deriv
BuildRequires: R-modelr
BuildRequires: R-microbenchmark
BuildRequires: R-ps
BuildRequires: R-RcppParallel-devel
BuildRequires: R-stringi
BuildRequires: R-cpp11-devel
Suggests: R-tinytest
Suggests: R-rmarkdown
%description
Provides a convenient framework to simulate, test, power, and visualize
data for differential expression studies with lognormal or negative
binomial outcomes. Supported designs are two-sample comparisons of
independent or dependent outcomes. Power may be summarized in the
context of controlling the per-family error rate or family-wise error
rate. Negative binomial methods are described in Yu, Fernandez, and
Brock (2017) <doi:10.1186/s12859-017-1648-2> and Yu, Fernandez, and
Brock (2020) <doi:10.1186/s12859-020-3541-7>.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/REFERENCES.bib
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/tinytest
%changelog
