Overview

File R-dfr.spec of Package R-dfr

# Automatically generated by CRAN2OBS
# 
# Spec file for package dfr 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  dfr 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.6 
Release:        0 
Summary:        Dual Feature Reduction for SGL 
Group:          Development/Libraries/Other 
License:        GPL (>= 3) 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         dfr_0.1.6.tar.gz 
Requires:       R-base 
Requires:	R-sgs
Requires:	R-caret
Requires:	R-ggplot2
Requires:	R-e1071
Requires:	R-foreach
Requires:	R-ModelMetrics
Requires:	R-plyr
Requires:	R-pROC
Requires:	R-recipes
Requires:	R-reshape2
Requires:	R-withr
Requires:	R-SLOPE
Requires:	R-Rlab
Requires:	R-Rcpp
Requires:	R-RcppArmadillo
Requires:	R-proxy
Requires:	R-iterators
Requires:	R-cli
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-lifecycle
Requires:	R-rlang
Requires:	R-S7
Requires:	R-scales
Requires:	R-vctrs
Requires:	R-data.table
Requires:	R-dplyr
Requires:	R-clock
Requires:	R-generics
Requires:	R-glue
Requires:	R-gower
Requires:	R-hardhat
Requires:	R-ipred
Requires:	R-lubridate
Requires:	R-magrittr
Requires:	R-purrr
Requires:	R-sparsevctrs
Requires:	R-tibble
Requires:	R-tidyr
Requires:	R-tidyselect
Requires:	R-timeDate
Requires:	R-stringr
Requires:	R-RcppEigen
Requires:	R-BH
Requires:	R-bigmemory
Requires:	R-bigmemory.sri
Requires:	R-uuid
Requires:	R-tzdb
Requires:	R-cpp11
Requires:	R-pillar
Requires:	R-R6
Requires:	R-prodlim
Requires:	R-timechange
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-stringi
Requires:	R-pkgconfig
Requires:	R-utf8
Requires:	R-diagram
Requires:	R-lava
Requires:	R-shape
Requires:	R-future.apply
Requires:	R-numDeriv
Requires:	R-progressr
Requires:	R-SQUAREM
Requires:	R-future
Requires:	R-globals
Requires:	R-digest
Requires:	R-listenv
Requires:	R-parallelly
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-sgs
BuildRequires: 	R-caret
BuildRequires: 	R-ggplot2
BuildRequires: 	R-e1071
BuildRequires: 	R-foreach
BuildRequires: 	R-ModelMetrics
BuildRequires: 	R-plyr
BuildRequires: 	R-pROC
BuildRequires: 	R-recipes
BuildRequires: 	R-reshape2
BuildRequires: 	R-withr
BuildRequires: 	R-SLOPE
BuildRequires: 	R-Rlab
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-RcppArmadillo-devel
BuildRequires: 	R-proxy
BuildRequires: 	R-iterators
BuildRequires: 	R-cli
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-lifecycle
BuildRequires: 	R-rlang
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-vctrs
BuildRequires: 	R-data.table
BuildRequires: 	R-dplyr
BuildRequires: 	R-clock
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-gower
BuildRequires: 	R-hardhat
BuildRequires: 	R-ipred
BuildRequires: 	R-lubridate
BuildRequires: 	R-magrittr
BuildRequires: 	R-purrr
BuildRequires: 	R-sparsevctrs
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyr
BuildRequires: 	R-tidyselect
BuildRequires: 	R-timeDate
BuildRequires: 	R-stringr
BuildRequires: 	R-RcppEigen-devel
BuildRequires: 	R-BH-devel
BuildRequires: 	R-bigmemory
BuildRequires: 	R-bigmemory.sri
BuildRequires: 	R-uuid
BuildRequires: 	R-tzdb
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-prodlim
BuildRequires: 	R-timechange
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-stringi
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-utf8
BuildRequires: 	R-diagram
BuildRequires: 	R-lava
BuildRequires: 	R-shape
BuildRequires: 	R-future.apply
BuildRequires: 	R-numDeriv
BuildRequires: 	R-progressr
BuildRequires: 	R-SQUAREM
BuildRequires: 	R-future
BuildRequires: 	R-globals
BuildRequires: 	R-digest
BuildRequires: 	R-listenv
BuildRequires: 	R-parallelly
 
Suggests:	R-SGL
Suggests:	R-gglasso
Suggests:	R-glmnet
Suggests:	R-testthat
%description 
Implementation of the Dual Feature Reduction (DFR) approach for the 
Sparse Group Lasso (SGL) and the Adaptive Sparse Group Lasso (aSGL) 
(Feser and Evangelou (2024) <doi:10.48550/arXiv.2405.17094>). The DFR 
approach is a feature reduction approach that applies strong screening 
to reduce the feature space before optimisation, leading to speed-up 
improvements for fitting SGL (Simon et al. (2013) 
<doi:10.1080/10618600.2012.681250>) and aSGL (Mendez-Civieta et al. 
(2020) <doi:10.1007/s11634-020-00413-8> and Poignard (2020) 
<doi:10.1007/s10463-018-0692-7>) models. DFR is implemented using the 
Adaptive Three Operator Splitting (ATOS) (Pedregosa and Gidel (2018) 
<doi:10.48550/arXiv.1804.02339>) algorithm, with linear and logistic 
SGL models supported, both of which can be fit using k-fold 
cross-validation. Dense and sparse input matrices are supported. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%{rlibdir}/%{packname}/CITATION
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog
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