File R-diffEnrich.spec of Package R-diffEnrich

# Automatically generated by CRAN2OBS
# 
# Spec file for package diffEnrich 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
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# published by the Open Source Initiative. 
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%global packname  diffEnrich 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        0.1.2 
Release:        0 
Summary:        Given a List of Gene Symbols, Performs Differential Enrichment Analysis 
Group:          Development/Libraries/Other 
License:        GPL-2 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         diffEnrich_0.1.2.tar.gz 
Requires:       R-base 
Requires:	R-dplyr
Requires:	R-ggplot2
Requires:	R-here
Requires:	R-rlang
Requires:	R-stringr
Requires:	R-reshape2
Requires:	R-ggnewscale
Requires:	R-cli
Requires:	R-generics
Requires:	R-glue
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-R6
Requires:	R-tibble
Requires:	R-tidyselect
Requires:	R-vctrs
Requires:	R-gtable
Requires:	R-isoband
Requires:	R-S7
Requires:	R-scales
Requires:	R-withr
Requires:	R-rprojroot
Requires:	R-plyr
Requires:	R-Rcpp
Requires:	R-stringi
Requires:	R-cpp11
Requires:	R-utf8
Requires:	R-farver
Requires:	R-labeling
Requires:	R-RColorBrewer
Requires:	R-viridisLite
Requires:	R-pkgconfig
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-dplyr
BuildRequires: 	R-ggplot2
BuildRequires: 	R-here
BuildRequires: 	R-rlang
BuildRequires: 	R-stringr
BuildRequires: 	R-reshape2
BuildRequires: 	R-ggnewscale
BuildRequires: 	R-cli
BuildRequires: 	R-generics
BuildRequires: 	R-glue
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-R6
BuildRequires: 	R-tibble
BuildRequires: 	R-tidyselect
BuildRequires: 	R-vctrs
BuildRequires: 	R-gtable
BuildRequires: 	R-isoband
BuildRequires: 	R-S7
BuildRequires: 	R-scales
BuildRequires: 	R-withr
BuildRequires: 	R-rprojroot
BuildRequires: 	R-plyr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-stringi
BuildRequires: 	R-cpp11-devel
BuildRequires: 	R-utf8
BuildRequires: 	R-farver
BuildRequires: 	R-labeling
BuildRequires: 	R-RColorBrewer
BuildRequires: 	R-viridisLite
BuildRequires: 	R-pkgconfig
 
Suggests:	R-knitr
Suggests:	R-rmarkdown
Suggests:	R-kableExtra
Suggests:	R-diagram
%description 
Compare functional enrichment between two experimentally-derived groups 
of genes or proteins (Peterson, DR., et al.(2018)) <doi: 
10.1371/journal.pone.0198139>. Given a list of gene symbols, 
'diffEnrich' will perform differential enrichment analysis using the 
Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. This package 
provides a number of functions that are intended to be used in a 
pipeline. Briefly, the user provides a KEGG formatted species id for 
either human, mouse or rat, and the package will download and clean 
species specific ENTREZ gene IDs and map them to their respective KEGG 
pathways by accessing KEGG's REST API. KEGG's API is used to guarantee 
the most up-to-date pathway data from KEGG. Next, the user will 
identify significantly enriched pathways from two gene sets, and 
finally, the user will identify pathways that are differentially 
enriched between the two gene sets. In addition to the analysis 
pipeline, this package also provides a plotting function. 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
 
%changelog