File R-drugdevelopR.spec of Package R-drugdevelopR

# Automatically generated by CRAN2OBS
# 
# Spec file for package drugdevelopR 
# This file is auto-generated using information in the package source, 
# esp. Description and Summary. Improvements in that area should be 
# discussed with upstream. 
# 
# Copyright (c) 2026 SUSE LINUX GmbH, Nuernberg, Germany. 
# 
# All modifications and additions to the file contributed by third parties 
# remain the property of their copyright owners, unless otherwise agreed 
# upon. The license for this file, and modifications and additions to the 
# file, is the same license as for the pristine package itself (unless the 
# license for the pristine package is not an Open Source License, in which 
# case the license is the MIT License). An "Open Source License" is a 
# license that conforms to the Open Source Definition (Version 1.9) 
# published by the Open Source Initiative. 
#  
# Please submit bugfixes or comments via http://bugs.opensuse.org/ 
# 
 
%global packname  drugdevelopR 
%global rlibdir   %{_libdir}/R/library 
 
Name:           R-%{packname} 
Version:        1.0.2 
Release:        0 
Summary:        Utility-Based Optimal Phase II/III Drug Development Planning 
Group:          Development/Libraries/Other 
License:        MIT + file LICENSE 
URL:            http://cran.r-project.org/web/packages/%{packname} 
Source:         drugdevelopR_1.0.2.tar.gz 
Requires:       R-base 
Requires:	R-doParallel
Requires:	R-foreach
Requires:	R-iterators
Requires:	R-mvtnorm
Requires:	R-cubature
Requires:	R-msm
Requires:	R-progressr
Requires:	R-Rcpp
Requires:	R-expm
Requires:	R-generics
Requires:	R-tibble
Requires:	R-digest
Requires:	R-cli
Requires:	R-lifecycle
Requires:	R-magrittr
Requires:	R-pillar
Requires:	R-pkgconfig
Requires:	R-rlang
Requires:	R-vctrs
Requires:	R-glue
Requires:	R-utf8
 
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse} 
# # Three others commonly needed 
# BuildRequires:  tex(ae.sty) 
# BuildRequires:  tex(fancyvrb.sty) 
# BuildRequires:  tex(inconsolata.sty) 
# BuildRequires:  tex(natbib.sty) 
# %else 
# BuildRequires:  texlive 
# %endif 
# BuildRequires:  texinfo 
BuildRequires:  fdupes 
BuildRequires:  R-base 
BuildRequires: 	R-doParallel
BuildRequires: 	R-foreach
BuildRequires: 	R-iterators
BuildRequires: 	R-mvtnorm
BuildRequires: 	R-cubature
BuildRequires: 	R-msm
BuildRequires: 	R-progressr
BuildRequires: 	R-Rcpp-devel
BuildRequires: 	R-expm
BuildRequires: 	R-generics
BuildRequires: 	R-tibble
BuildRequires: 	R-digest
BuildRequires: 	R-cli
BuildRequires: 	R-lifecycle
BuildRequires: 	R-magrittr
BuildRequires: 	R-pillar
BuildRequires: 	R-pkgconfig
BuildRequires: 	R-rlang
BuildRequires: 	R-vctrs
BuildRequires: 	R-glue
BuildRequires: 	R-utf8
 
Suggests:	R-rmarkdown
Suggests:	R-knitr
Suggests:	R-testthat
Suggests:	R-covr
Suggests:	R-kableExtra
Suggests:	R-magrittr
Suggests:	R-devtools
%description 
Plan optimal sample size allocation and go/no-go decision rules for 
phase II/III drug development programs with time-to-event, binary or 
normally distributed endpoints when assuming fixed treatment effects or 
a prior distribution for the treatment effect, using methods from 
Kirchner et al. (2016) <doi:10.1002/sim.6624> and Preussler (2020). 
Optimal is in the sense of maximal expected utility, where the utility 
is a function taking into account the expected cost and benefit of the 
program. It is possible to extend to more complex settings with bias 
correction (Preussler S et al. (2020) 
<doi:10.1186/s12874-020-01093-w>), multiple phase III trials (Preussler 
et al. (2019) <doi:10.1002/bimj.201700241>), multi-arm trials 
(Preussler et al. (2019) <doi:10.1080/19466315.2019.1702092>), and 
multiple endpoints (Kieser et al. (2018) <doi:10.1002/pst.1861>). 
 
%prep 
%setup -q -c -n %{packname} 
# the next line is needed, because we build without --clean in between two packages 
rm -rf ~/.R  
 
 
%build 
 
%install 
mkdir -p %{buildroot}%{rlibdir} 
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} 
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) 
rm -f %{buildroot}%{rlibdir}/R.css 
%fdupes -s %{buildroot}%{rlibdir} 
 
#%%check 
#%%{_bindir}/R CMD check %%{packname} 
 
%files 
%dir %{rlibdir}/%{packname} 
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%doc %{rlibdir}/%{packname}/NEWS.md
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/doc
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%{rlibdir}/%{packname}/validation
 
%changelog