File R-easynem.spec of Package R-easynem
# Automatically generated by CRAN2OBS
#
# Spec file for package easynem
# This file is auto-generated using information in the package source,
# esp. Description and Summary. Improvements in that area should be
# discussed with upstream.
#
# Copyright (c) 2025 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
#
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global packname easynem
%global rlibdir %{_libdir}/R/library
Name: R-%{packname}
Version: 1.0.3
Release: 0
Summary: Nematode Community Analysis
Group: Development/Libraries/Other
License: MIT + file LICENSE
URL: http://cran.r-project.org/web/packages/%{packname}
Source: easynem_1.0.3.tar.gz
Requires: R-base
Requires: R-agricolae
Requires: R-broom
Requires: R-dplyr
Requires: R-DT
Requires: R-ggplot2
Requires: R-ggpubr
Requires: R-ggraph
Requires: R-igraph
Requires: R-multcompView
Requires: R-readr
Requires: R-reshape2
Requires: R-rlang
Requires: R-rstatix
Requires: R-shiny
Requires: R-shinydashboard
Requires: R-Ternary
Requires: R-tibble
Requires: R-tidyr
Requires: R-vegan
Requires: R-AlgDesign
Requires: R-backports
Requires: R-cli
Requires: R-generics
Requires: R-glue
Requires: R-lifecycle
Requires: R-purrr
Requires: R-stringr
Requires: R-magrittr
Requires: R-pillar
Requires: R-R6
Requires: R-tidyselect
Requires: R-vctrs
Requires: R-crosstalk
Requires: R-htmltools
Requires: R-htmlwidgets
Requires: R-jquerylib
Requires: R-jsonlite
Requires: R-promises
Requires: R-gtable
Requires: R-isoband
Requires: R-S7
Requires: R-scales
Requires: R-withr
Requires: R-ggrepel
Requires: R-ggsci
Requires: R-cowplot
Requires: R-ggsignif
Requires: R-gridExtra
Requires: R-polynom
Requires: R-ggforce
Requires: R-viridis
Requires: R-tidygraph
Requires: R-graphlayouts
Requires: R-memoise
Requires: R-cpp11
Requires: R-pkgconfig
Requires: R-clipr
Requires: R-crayon
Requires: R-hms
Requires: R-vroom
Requires: R-tzdb
Requires: R-plyr
Requires: R-Rcpp
Requires: R-corrplot
Requires: R-car
Requires: R-httpuv
Requires: R-mime
Requires: R-xtable
Requires: R-fontawesome
Requires: R-sourcetools
Requires: R-later
Requires: R-fastmap
Requires: R-commonmark
Requires: R-bslib
Requires: R-cachem
Requires: R-PlotTools
Requires: R-RcppHungarian
Requires: R-sp
Requires: R-permute
Requires: R-base64enc
Requires: R-sass
Requires: R-carData
Requires: R-abind
Requires: R-Formula
Requires: R-pbkrtest
Requires: R-quantreg
Requires: R-lme4
Requires: R-lazyeval
Requires: R-tweenr
Requires: R-polyclip
Requires: R-systemfonts
Requires: R-RcppArmadillo
Requires: R-digest
Requires: R-knitr
Requires: R-rmarkdown
Requires: R-yaml
Requires: R-utf8
Requires: R-otel
Requires: R-farver
Requires: R-labeling
Requires: R-RColorBrewer
Requires: R-viridisLite
Requires: R-stringi
Requires: R-bit64
Requires: R-progress
Requires: R-bit
Requires: R-evaluate
Requires: R-highr
Requires: R-xfun
Requires: R-minqa
Requires: R-nloptr
Requires: R-reformulas
Requires: R-RcppEigen
Requires: R-numDeriv
Requires: R-doBy
Requires: R-prettyunits
Requires: R-SparseM
Requires: R-MatrixModels
Requires: R-tinytex
Requires: R-fs
Requires: R-rappdirs
Requires: R-Deriv
Requires: R-modelr
Requires: R-microbenchmark
Requires: R-Rdpack
Requires: R-rbibutils
# %%if 0%%{?sle_version} > 120400 || 0%%{?is_opensuse}
# # Three others commonly needed
# BuildRequires: tex(ae.sty)
# BuildRequires: tex(fancyvrb.sty)
# BuildRequires: tex(inconsolata.sty)
# BuildRequires: tex(natbib.sty)
# %else
# BuildRequires: texlive
# %endif
# BuildRequires: texinfo
BuildRequires: fdupes
BuildRequires: R-base
BuildRequires: R-agricolae
BuildRequires: R-broom
BuildRequires: R-dplyr
BuildRequires: R-DT
BuildRequires: R-ggplot2
BuildRequires: R-ggpubr
BuildRequires: R-ggraph
BuildRequires: R-igraph
BuildRequires: R-multcompView
BuildRequires: R-readr
BuildRequires: R-reshape2
BuildRequires: R-rlang
BuildRequires: R-rstatix
BuildRequires: R-shiny
BuildRequires: R-shinydashboard
BuildRequires: R-Ternary
BuildRequires: R-tibble
BuildRequires: R-tidyr
BuildRequires: R-vegan
BuildRequires: R-AlgDesign
BuildRequires: R-backports
BuildRequires: R-cli
BuildRequires: R-generics
BuildRequires: R-glue
BuildRequires: R-lifecycle
BuildRequires: R-purrr
BuildRequires: R-stringr
BuildRequires: R-magrittr
BuildRequires: R-pillar
BuildRequires: R-R6
BuildRequires: R-tidyselect
BuildRequires: R-vctrs
BuildRequires: R-crosstalk
BuildRequires: R-htmltools
BuildRequires: R-htmlwidgets
BuildRequires: R-jquerylib
BuildRequires: R-jsonlite
BuildRequires: R-promises
BuildRequires: R-gtable
BuildRequires: R-isoband
BuildRequires: R-S7
BuildRequires: R-scales
BuildRequires: R-withr
BuildRequires: R-ggrepel
BuildRequires: R-ggsci
BuildRequires: R-cowplot
BuildRequires: R-ggsignif
BuildRequires: R-gridExtra
BuildRequires: R-polynom
BuildRequires: R-ggforce
BuildRequires: R-viridis
BuildRequires: R-tidygraph
BuildRequires: R-graphlayouts
BuildRequires: R-memoise
BuildRequires: R-cpp11-devel
BuildRequires: R-pkgconfig
BuildRequires: R-clipr
BuildRequires: R-crayon
BuildRequires: R-hms
BuildRequires: R-vroom
BuildRequires: R-tzdb
BuildRequires: R-plyr
BuildRequires: R-Rcpp-devel
BuildRequires: R-corrplot
BuildRequires: R-car
BuildRequires: R-httpuv
BuildRequires: R-mime
BuildRequires: R-xtable
BuildRequires: R-fontawesome
BuildRequires: R-sourcetools-devel
BuildRequires: R-later
BuildRequires: R-fastmap
BuildRequires: R-commonmark
BuildRequires: R-bslib
BuildRequires: R-cachem
BuildRequires: R-PlotTools
BuildRequires: R-RcppHungarian
BuildRequires: R-sp
BuildRequires: R-permute
BuildRequires: R-base64enc
BuildRequires: R-sass
BuildRequires: R-carData
BuildRequires: R-abind
BuildRequires: R-Formula
BuildRequires: R-pbkrtest
BuildRequires: R-quantreg
BuildRequires: R-lme4
BuildRequires: R-lazyeval
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BuildRequires: R-otel
BuildRequires: R-farver
BuildRequires: R-labeling
BuildRequires: R-RColorBrewer
BuildRequires: R-viridisLite
BuildRequires: R-stringi
BuildRequires: R-bit64
BuildRequires: R-progress
BuildRequires: R-bit
BuildRequires: R-evaluate
BuildRequires: R-highr
BuildRequires: R-xfun
BuildRequires: R-minqa
BuildRequires: R-nloptr
BuildRequires: R-reformulas
BuildRequires: R-RcppEigen-devel
BuildRequires: R-numDeriv
BuildRequires: R-doBy
BuildRequires: R-prettyunits
BuildRequires: R-SparseM
BuildRequires: R-MatrixModels
BuildRequires: R-tinytex
BuildRequires: R-fs
BuildRequires: R-rappdirs
BuildRequires: R-Deriv
BuildRequires: R-modelr
BuildRequires: R-microbenchmark
BuildRequires: R-Rdpack
BuildRequires: R-rbibutils
Suggests: R-spelling
Suggests: R-testthat
%description
Provides a built-in Nemaplex database for nematodes, which can be used
to search for various nematodes. Also supports various nematode
community and functional analyses such as nematode diversity, maturity
index, metabolic footprint, and functional guild. The methods are based
on <https://shiny.wur.nl/ninja/>, Bongers, T. (1990)
<doi:10.1007/BF00324627>, Ferris, H. (2010)
<doi:10.1016/j.ejsobi.2010.01.003>, Wan, B. et al. (2022)
<doi:10.1016/j.soilbio.2022.108695>, and Van Den Hoogen, J. et al.
(2019) <doi:10.1038/s41586-019-1418-6>.
%prep
%setup -q -c -n %{packname}
# the next line is needed, because we build without --clean in between two packages
rm -rf ~/.R
%build
%install
mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
%fdupes -s %{buildroot}%{rlibdir}
#%%check
#%%{_bindir}/R CMD check %%{packname}
%files
%dir %{rlibdir}/%{packname}
%doc %{rlibdir}/%{packname}/DESCRIPTION
%{rlibdir}/%{packname}/INDEX
%license %{rlibdir}/%{packname}/LICENSE
%{rlibdir}/%{packname}/Meta
%{rlibdir}/%{packname}/NAMESPACE
%{rlibdir}/%{packname}/R
%{rlibdir}/%{packname}/WORDLIST
%{rlibdir}/%{packname}/data
%{rlibdir}/%{packname}/extdata
%doc %{rlibdir}/%{packname}/help
%doc %{rlibdir}/%{packname}/html
%changelog
